LOCUS       NT_077402             257719 bp    DNA     linear   CON 30-OCT-2012
DEFINITION  Homo sapiens chromosome 1 genomic contig, GRCh37.p10 Primary
            Assembly.
ACCESSION   NT_077402 GPS_000125215 NT_077911
VERSION     NT_077402.2  GI:224514618
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 257719)
  AUTHORS   Gregory,S.G., Barlow,K.F., McLay,K.E., Kaul,R., Swarbreck,D.,
            Dunham,A., Scott,C.E., Howe,K.L., Woodfine,K., Spencer,C.C.,
            Jones,M.C., Gillson,C., Searle,S., Zhou,Y., Kokocinski,F.,
            McDonald,L., Evans,R., Phillips,K., Atkinson,A., Cooper,R.,
            Jones,C., Hall,R.E., Andrews,T.D., Lloyd,C., Ainscough,R.,
            Almeida,J.P., Ambrose,K.D., Anderson,F., Andrew,R.W., Ashwell,R.I.,
            Aubin,K., Babbage,A.K., Bagguley,C.L., Bailey,J., Beasley,H.,
            Bethel,G., Bird,C.P., Bray-Allen,S., Brown,J.Y., Brown,A.J.,
            Buckley,D., Burton,J., Bye,J., Carder,C., Chapman,J.C., Clark,S.Y.,
            Clarke,G., Clee,C., Cobley,V., Collier,R.E., Corby,N.,
            Coville,G.J., Davies,J., Deadman,R., Dunn,M., Earthrowl,M.,
            Ellington,A.G., Errington,H., Frankish,A., Frankland,J., French,L.,
            Garner,P., Garnett,J., Gay,L., Ghori,M.R., Gibson,R., Gilby,L.M.,
            Gillett,W., Glithero,R.J., Grafham,D.V., Griffiths,C.,
            Griffiths-Jones,S., Grocock,R., Hammond,S., Harrison,E.S., Hart,E.,
            Haugen,E., Heath,P.D., Holmes,S., Holt,K., Howden,P.J., Hunt,A.R.,
            Hunt,S.E., Hunter,G., Isherwood,J., James,R., Johnson,C.,
            Johnson,D., Joy,A., Kay,M., Kershaw,J.K., Kibukawa,M.,
            Kimberley,A.M., King,A., Knights,A.J., Lad,H., Laird,G., Lawlor,S.,
            Leongamornlert,D.A., Lloyd,D.M., Loveland,J., Lovell,J., Lush,M.J.,
            Lyne,R., Martin,S., Mashreghi-Mohammadi,M., Matthews,L.,
            Matthews,N.S., McLaren,S., Milne,S., Mistry,S., Moore,M.J.,
            Nickerson,T., O'Dell,C.N., Oliver,K., Palmeiri,A., Palmer,S.A.,
            Parker,A., Patel,D., Pearce,A.V., Peck,A.I., Pelan,S., Phelps,K.,
            Phillimore,B.J., Plumb,R., Rajan,J., Raymond,C., Rouse,G.,
            Saenphimmachak,C., Sehra,H.K., Sheridan,E., Shownkeen,R., Sims,S.,
            Skuce,C.D., Smith,M., Steward,C., Subramanian,S., Sycamore,N.,
            Tracey,A., Tromans,A., Van Helmond,Z., Wall,M., Wallis,J.M.,
            White,S., Whitehead,S.L., Wilkinson,J.E., Willey,D.L., Williams,H.,
            Wilming,L., Wray,P.W., Wu,Z., Coulson,A., Vaudin,M., Sulston,J.E.,
            Durbin,R., Hubbard,T., Wooster,R., Dunham,I., Carter,N.P.,
            McVean,G., Ross,M.T., Harrow,J., Olson,M.V., Beck,S., Rogers,J.,
            Bentley,D.R., Banerjee,R., Bryant,S.P., Burford,D.C., Burrill,W.D.,
            Clegg,S.M., Dhami,P., Dovey,O., Faulkner,L.M., Gribble,S.M.,
            Langford,C.F., Pandian,R.D., Porter,K.M. and Prigmore,E.
  TITLE     The DNA sequence and biological annotation of human chromosome 1
  JOURNAL   Nature 441 (7091), 315-321 (2006)
   PUBMED   16710414
  REMARK    Erratum:[Nature. 2006 Oct 26;443(7114):1013. Banerjee, R [added];
            Bryant, SP [added]; Burford, DC [added]; Burrill, WDH [added];
            Clegg, SM [added]; Dhami, P [added]; Dovey, O [added]; Faulkner, LM
            [added]; Gribble, SM [added]; Langford, CF [added]; Pandian, RD
            [added]; Porter, KM [added]; Prigmore, E [added]]
REFERENCE   2  (bases 1 to 257719)
  CONSRTM   International Human Genome Sequencing Consortium
  TITLE     Finishing the euchromatic sequence of the human genome
  JOURNAL   Nature 431 (7011), 931-945 (2004)
   PUBMED   15496913
REFERENCE   3  (bases 1 to 257719)
  AUTHORS   Lander,E.S., Linton,L.M., Birren,B., Nusbaum,C., Zody,M.C.,
            Baldwin,J., Devon,K., Dewar,K., Doyle,M., FitzHugh,W., Funke,R.,
            Gage,D., Harris,K., Heaford,A., Howland,J., Kann,L., Lehoczky,J.,
            LeVine,R., McEwan,P., McKernan,K., Meldrim,J., Mesirov,J.P.,
            Miranda,C., Morris,W., Naylor,J., Raymond,C., Rosetti,M.,
            Santos,R., Sheridan,A., Sougnez,C., Stange-Thomann,N.,
            Stojanovic,N., Subramanian,A., Wyman,D., Rogers,J., Sulston,J.,
            Ainscough,R., Beck,S., Bentley,D., Burton,J., Clee,C., Carter,N.,
            Coulson,A., Deadman,R., Deloukas,P., Dunham,A., Dunham,I.,
            Durbin,R., French,L., Grafham,D., Gregory,S., Hubbard,T.,
            Humphray,S., Hunt,A., Jones,M., Lloyd,C., McMurray,A., Matthews,L.,
            Mercer,S., Milne,S., Mullikin,J.C., Mungall,A., Plumb,R., Ross,M.,
            Shownkeen,R., Sims,S., Waterston,R.H., Wilson,R.K., Hillier,L.W.,
            McPherson,J.D., Marra,M.A., Mardis,E.R., Fulton,L.A.,
            Chinwalla,A.T., Pepin,K.H., Gish,W.R., Chissoe,S.L., Wendl,M.C.,
            Delehaunty,K.D., Miner,T.L., Delehaunty,A., Kramer,J.B., Cook,L.L.,
            Fulton,R.S., Johnson,D.L., Minx,P.J., Clifton,S.W., Hawkins,T.,
            Branscomb,E., Predki,P., Richardson,P., Wenning,S., Slezak,T.,
            Doggett,N., Cheng,J.F., Olsen,A., Lucas,S., Elkin,C.,
            Uberbacher,E., Frazier,M., Gibbs,R.A., Muzny,D.M., Scherer,S.E.,
            Bouck,J.B., Sodergren,E.J., Worley,K.C., Rives,C.M., Gorrell,J.H.,
            Metzker,M.L., Naylor,S.L., Kucherlapati,R.S., Nelson,D.L.,
            Weinstock,G.M., Sakaki,Y., Fujiyama,A., Hattori,M., Yada,T.,
            Toyoda,A., Itoh,T., Kawagoe,C., Watanabe,H., Totoki,Y., Taylor,T.,
            Weissenbach,J., Heilig,R., Saurin,W., Artiguenave,F., Brottier,P.,
            Bruls,T., Pelletier,E., Robert,C., Wincker,P., Smith,D.R.,
            Doucette-Stamm,L., Rubenfield,M., Weinstock,K., Lee,H.M.,
            Dubois,J., Rosenthal,A., Platzer,M., Nyakatura,G., Taudien,S.,
            Rump,A., Yang,H., Yu,J., Wang,J., Huang,G., Gu,J., Hood,L.,
            Rowen,L., Madan,A., Qin,S., Davis,R.W., Federspiel,N.A.,
            Abola,A.P., Proctor,M.J., Myers,R.M., Schmutz,J., Dickson,M.,
            Grimwood,J., Cox,D.R., Olson,M.V., Kaul,R., Raymond,C., Shimizu,N.,
            Kawasaki,K., Minoshima,S., Evans,G.A., Athanasiou,M., Schultz,R.,
            Roe,B.A., Chen,F., Pan,H., Ramser,J., Lehrach,H., Reinhardt,R.,
            McCombie,W.R., de la Bastide,M., Dedhia,N., Blocker,H.,
            Hornischer,K., Nordsiek,G., Agarwala,R., Aravind,L., Bailey,J.A.,
            Bateman,A., Batzoglou,S., Birney,E., Bork,P., Brown,D.G.,
            Burge,C.B., Cerutti,L., Chen,H.C., Church,D., Clamp,M.,
            Copley,R.R., Doerks,T., Eddy,S.R., Eichler,E.E., Furey,T.S.,
            Galagan,J., Gilbert,J.G., Harmon,C., Hayashizaki,Y., Haussler,D.,
            Hermjakob,H., Hokamp,K., Jang,W., Johnson,L.S., Jones,T.A.,
            Kasif,S., Kaspryzk,A., Kennedy,S., Kent,W.J., Kitts,P.,
            Koonin,E.V., Korf,I., Kulp,D., Lancet,D., Lowe,T.M., McLysaght,A.,
            Mikkelsen,T., Moran,J.V., Mulder,N., Pollara,V.J., Ponting,C.P.,
            Schuler,G., Schultz,J., Slater,G., Smit,A.F., Stupka,E.,
            Szustakowski,J., Thierry-Mieg,D., Thierry-Mieg,J., Wagner,L.,
            Wallis,J., Wheeler,R., Williams,A., Wolf,Y.I., Wolfe,K.H.,
            Yang,S.P., Yeh,R.F., Collins,F., Guyer,M.S., Peterson,J.,
            Felsenfeld,A., Wetterstrand,K.A., Patrinos,A., Morgan,M.J., de
            Jong,P., Catanese,J.J., Osoegawa,K., Shizuya,H., Choi,S. and
            Chen,Y.J.
  CONSRTM   International Human Genome Sequencing Consortium
  TITLE     Initial sequencing and analysis of the human genome
  JOURNAL   Nature 409 (6822), 860-921 (2001)
   PUBMED   11237011
  REMARK    Erratum:[Nature 2001 Aug 2;412(6846):565]
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            GL000001.1.
            On or before Jun 10, 2009 this sequence version replaced
            gi:29794400, gi:29794392.
            Assembly Name: GRCh37.p10 Primary Assembly
            The DNA sequence is composed of genomic sequence, primarily
            finished clones that were sequenced as part of the Human Genome
            Project. PCR products and WGS shotgun sequence have been added
            where necessary to fill gaps or correct errors. All such additions
            are manually curated by GRC staff. For more information see:
            http://genomereference.org.
            ##Genome-Annotation-Data-START##
            Annotation Provider :: NCBI
            Annotation Status   :: Full annotation
            Annotation Version  :: Homo sapiens Annotation Release 104
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            Annotation Method   :: Best-placed RefSeq; Gnomon
            Features Annotated  :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..257719
                     /organism="Homo sapiens"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            954..1507
                     /gene="LOC100506145"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GNOMON. Supporting evidence
                     includes similarity to: 1 Protein"
                     /pseudo
                     /db_xref="GeneID:100506145"
     exon            954..1507
                     /gene="LOC100506145"
                     /exception="unclassified transcription discrepancy"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GNOMON. Supporting evidence
                     includes similarity to: 1 Protein"
                     /number=1
                     /pseudo
                     /db_xref="GeneID:100506145"
     gene            1874..4409
                     /gene="DDX11L1"
                     /note="DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like
                     1; Derived by automated computational analysis using gene
                     prediction method: BestRefseq."
                     /pseudo
                     /db_xref="GeneID:100287102"
                     /db_xref="HGNC:37102"
     misc_RNA        join(1874..2227,2613..2721,3221..4409)
                     /gene="DDX11L1"
                     /product="DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
                     like 1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /pseudo
                     /transcript_id="NR_046018.2"
                     /db_xref="GI:389886562"
                     /db_xref="GeneID:100287102"
                     /db_xref="HGNC:37102"
     gene            complement(4362..19370)
                     /gene="WASH7P"
                     /gene_synonym="FAM39F; WASH5P"
                     /note="WAS protein family homolog 7 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: BestRefseq."
                     /pseudo
                     /db_xref="GeneID:653635"
                     /db_xref="HGNC:38034"
     misc_RNA        complement(join(4362..4829,4970..5038,5796..5947,
                     6607..6765,6858..7055,7233..7368,7606..7742,7915..8061,
                     8268..8366,14738..14891,19321..19370))
                     /gene="WASH7P"
                     /gene_synonym="FAM39F; WASH5P"
                     /product="WAS protein family homolog 7 pseudogene"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /pseudo
                     /transcript_id="NR_024540.1"
                     /db_xref="GI:215277009"
                     /db_xref="GeneID:653635"
                     /db_xref="HGNC:38034"
     STS             4596..4719
                     /standard_name="G54113"
                     /db_xref="UniSTS:109350"
     gene            20366..20503
                     /gene="MIR1302-2"
                     /gene_synonym="hsa-mir-1302-2; MIRN1302-2"
                     /note="microRNA 1302-2; Derived by automated computational
                     analysis using gene prediction method: BestRefseq."
                     /db_xref="GeneID:100302278"
                     /db_xref="HGNC:35294"
                     /db_xref="miRBase:MI0006363"
     ncRNA           20366..20503
                     /gene="MIR1302-2"
                     /gene_synonym="hsa-mir-1302-2; MIRN1302-2"
                     /ncRNA_class="miRNA"
                     /product="microRNA 1302-2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /transcript_id="NR_036051.1"
                     /db_xref="GI:301173067"
                     /db_xref="GeneID:100302278"
                     /db_xref="HGNC:35294"
                     /db_xref="miRBase:MI0006363"
     ncRNA           20438..20458
                     /gene="MIR1302-2"
                     /gene_synonym="hsa-mir-1302-2; MIRN1302-2"
                     /ncRNA_class="miRNA"
                     /product="hsa-miR-1302"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /db_xref="miRBase:MIMAT0005890"
                     /db_xref="GeneID:100302278"
                     /db_xref="HGNC:35294"
                     /db_xref="miRBase:MI0006363"
     gene            complement(24611..26081)
                     /gene="FAM138A"
                     /gene_synonym="F379"
                     /note="family with sequence similarity 138, member A;
                     Derived by automated computational analysis using gene
                     prediction method: BestRefseq."
                     /db_xref="GeneID:645520"
                     /db_xref="HGNC:32334"
     misc_RNA        complement(join(24611..25174,25277..25481,25721..26081))
                     /gene="FAM138A"
                     /gene_synonym="F379"
                     /product="family with sequence similarity 138, member A"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /transcript_id="NR_026818.1"
                     /db_xref="GI:223555930"
                     /db_xref="GeneID:645520"
                     /db_xref="HGNC:32334"
     gene            42453..43396
                     /gene="OR4G4P"
                     /note="olfactory receptor, family 4, subfamily G, member 4
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Curated Genomic."
                     /pseudo
                     /db_xref="GeneID:79504"
                     /db_xref="HGNC:14822"
     gene            53016..53885
                     /gene="OR4G11P"
                     /note="olfactory receptor, family 4, subfamily G, member
                     11 pseudogene; Derived by automated computational analysis
                     using gene prediction method: Curated Genomic."
                     /pseudo
                     /db_xref="GeneID:403263"
                     /db_xref="HGNC:31276"
     gene            59091..60008
                     /gene="OR4F5"
                     /note="olfactory receptor, family 4, subfamily F, member
                     5; Derived by automated computational analysis using gene
                     prediction method: BestRefseq."
                     /db_xref="GeneID:79501"
                     /db_xref="HGNC:14825"
                     /db_xref="HPRD:14974"
     mRNA            59091..60008
                     /gene="OR4F5"
                     /product="olfactory receptor, family 4, subfamily F,
                     member 5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /transcript_id="NM_001005484.1"
                     /db_xref="GI:53828739"
                     /db_xref="GeneID:79501"
                     /db_xref="HGNC:14825"
                     /db_xref="HPRD:14974"
     CDS             59091..60008
                     /gene="OR4F5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /codon_start=1
                     /product="olfactory receptor 4F5"
                     /protein_id="NP_001005484.1"
                     /db_xref="GI:53828740"
                     /db_xref="CCDS:CCDS30547.1"
                     /db_xref="GeneID:79501"
                     /db_xref="HGNC:14825"
                     /db_xref="HPRD:14974"
                     /translation="MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVS
                     DSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGG
                     SEMVILIAMGFDRYIAICKPLHYTTIMCGNACVGIMAVTWGIGFLHSVSQLAFAVHLL
                     FCGPNEVDSFYCDLPRVIKLACTDTYRLDIMVIANSGVLTVCSFVLLIISYTIILMTI
                     QHRPLDKSSKALSTLTAHITVVLLFFGPCVFIYAWPFPIKSLDKFLAVFYSVITPLLN
                     PIIYTLRNKDMKTAIRQLRKWDAHSSVKF"
     gene            121125..125677
                     /gene="LOC100420257"
                     /note="capicua homolog (Drosophila) pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Curated Genomic."
                     /pseudo
                     /db_xref="GeneID:100420257"
     gene            complement(124773..130566)
                     /gene="LOC729737"
                     /note="uncharacterized LOC729737; Derived by automated
                     computational analysis using gene prediction method:
                     BestRefseq."
                     /db_xref="GeneID:729737"
     misc_RNA        complement(join(124773..129696,129790..129847,
                     130075..130566))
                     /gene="LOC729737"
                     /product="uncharacterized LOC729737"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefseq."
                     /transcript_id="NR_039983.2"
                     /db_xref="GI:366393019"
                     /db_xref="GeneID:729737"
     gene            complement(148610..158148)
                     /gene="LOC100996442"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GNOMON. Supporting evidence
                     includes similarity to: 5 ESTs"
                     /db_xref="GeneID:100996442"
     misc_RNA        complement(join(148610..148674,154263..154791,
                     155884..155942,158100..158148))
                     /gene="LOC100996442"
                     /product="uncharacterized LOC100996442"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GNOMON. Supporting evidence
                     includes similarity to: 5 ESTs"
                     /transcript_id="XR_159064.2"
                     /db_xref="GI:410170376"
                     /db_xref="GeneID:100996442"
     assembly_gap    167418..217417
                     /estimated_length=50000
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(217770..218778)
                     /gene="RPL23AP21"
                     /gene_synonym="RPL23A_1_1"
                     /note="ribosomal protein L23a pseudogene 21; Derived by
                     automated computational analysis using gene prediction
                     method: Curated Genomic."
                     /pseudo
                     /db_xref="GeneID:728481"
                     /db_xref="HGNC:35827"
CONTIG      join(complement(AP006221.1:36117..36731),AL627309.15:103..166904,
            gap(50000),AP006222.1:1..40302)
//

