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            },
            "analysis_types": "dummy analysis type"
        },
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                "name": "input_bam",
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                    {
                        "name": "input_bams",
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                                    ],
                                    "edit": [
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                            },
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                                "File",
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                ],
                "meta": {
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                                    ],
                                    "edit": [
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                }
            },
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                ],
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                }
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        ],
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            "analysis_types": "dummy analysis type"
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        "inputs": [
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                "source": [
                    {
                        "name": "input_bams",
                        "for_file": "/files-processed/GAPFICEE9LEN/",
                        "step": 5
                    }
                ],
                "meta": {
                    "global": true,
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                },
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                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
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                                    ]
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                            },
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                                "FileProcessed",
                                "File",
                                "Item"
                            ],
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                            "workflow_run_outputs": [
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                                    "status": "shared",
                                    "display_title": "workflow_sentieon_dedup-recal v1.0.0 run 2022-04-29 04:25:39.481922",
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                                    }
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                                    "QualityMetric",
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                                ],
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                    ]
                }
            },
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                                        "group.admin"
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                "source": [
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                        "name": "regions",
                        "for_file": "/files-reference/GAPFIBGEOI72/"
                    }
                ],
                "meta": {
                    "global": true,
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                },
                "run_data": {
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                                "principals_allowed": {
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                                        "system.Authenticated"
                                    ],
                                    "edit": [
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                                "FileReference",
                                "File",
                                "Item"
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            },
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                        "dimension": "0",
                        "workflow_argument_name": "nthreads"
                    }
                }
            }
        ],
        "outputs": [
            {
                "name": "rck",
                "target": [
                    {
                        "name": "rck",
                        "for_file": "/files-processed/GAPFID5AE9ME/",
                        "step": 3
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                                "display_title": "rck_gz",
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                                "@id": "/file-formats/rck_gz/",
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                                        "system.Authenticated"
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                                    "edit": [
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                                        "WorkflowRun",
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                "status": "in review",
                "display_title": "Run granite mpileupCounts - GAPFKJF3DVC7",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/ace7324e-2943-435b-ac1d-5565953953d5/",
                "principals_allowed": {
                    "view": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin",
                        "group.read-only-admin",
                        "remoteuser.EMBED",
                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_bam",
                "source": [
                    {
                        "name": "input_bams",
                        "for_file": "/files-processed/GAPFITNHTOZI/",
                        "step": 7
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "222ce0eb-22f8-40e3-87d5-f2708ad18393",
                            "file_format": {
                                "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c",
                                "display_title": "bam",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/bam/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFITNHTOZI.bam",
                            "file_size": 111610806810,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFITNHTOZI/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_sentieon_dedup-recal v1.0.0 run 2022-04-29 04:25:46.368031",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/d4b58584-ecc6-41ad-a0ce-81d4b600b033/",
                                    "uuid": "d4b58584-ecc6-41ad-a0ce-81d4b600b033",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "5530ced5-5252-42f2-afde-0d14e30a669b",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricBamqc from 2022-04-29",
                                "@type": [
                                    "QualityMetricBamqc",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-bamqc/5530ced5-5252-42f2-afde-0d14e30a669b/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_bam"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "regions",
                "source": [
                    {
                        "name": "regions",
                        "for_file": "/files-reference/GAPFIBGEOI72/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1c07a3aa-e2a3-498c-b838-15991c4a2f28",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIBGEOI72.txt",
                            "file_size": 7603,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIBGEOI72/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "regions"
                        }
                    ]
                }
            },
            {
                "name": "nthreads",
                "source": [
                    {
                        "name": "nthreads"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter",
                    "value": [
                        "15"
                    ],
                    "meta": {
                        "ordinal": 1,
                        "dimension": "0",
                        "workflow_argument_name": "nthreads"
                    }
                }
            }
        ],
        "outputs": [
            {
                "name": "rck",
                "target": [
                    {
                        "name": "rck",
                        "for_file": "/files-processed/GAPFI5T4QIBP/",
                        "step": 3
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFI5T4QIBP.rck.gz",
                            "uuid": "87e8832d-9ece-439a-8602-152b1ee74b0f",
                            "file_format": {
                                "@type": [
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                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "rck_gz",
                                "uuid": "20d4d3aa-5f1c-4b75-9e25-73f9f370fefa",
                                "@id": "/file-formats/rck_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 12086253767,
                            "@id": "/files-processed/GAPFI5T4QIBP/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "6fb5a7f0-2156-49e3-bf42-95f4e8decdde",
                                    "@id": "/workflow-runs-awsem/6fb5a7f0-2156-49e3-bf42-95f4e8decdde/",
                                    "display_title": "workflow_granite-rckTar v1.0.0 run 2022-04-29 21:10:35.118284",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
    {
        "name": 8,
        "meta": {
            "@id": "/workflow-runs-awsem/d2063a22-99c7-420e-b179-6daedad12499/",
            "workflow": {
                "uuid": "00035e35-be9c-41c6-9aa9-a0e0b49d0759",
                "status": "in review",
                "display_title": "Run gatk HaplotypeCaller - GAPWFO65T9P3",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/00035e35-be9c-41c6-9aa9-a0e0b49d0759/",
                "principals_allowed": {
                    "view": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin",
                        "group.read-only-admin",
                        "remoteuser.EMBED",
                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_bam",
                "source": [
                    {
                        "name": "input_bams",
                        "for_file": "/files-processed/GAPFIMIARUOB/",
                        "step": 2
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "676dd0c1-82c4-41be-9ae7-619ce47e158e",
                            "file_format": {
                                "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c",
                                "display_title": "bam",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/bam/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIMIARUOB.bam",
                            "file_size": 106616301305,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIMIARUOB/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_sentieon_dedup-recal v1.0.0 run 2022-04-29 04:25:35.950498",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/784f3f5f-d3cf-432b-8c0f-3dcd957b2042/",
                                    "uuid": "784f3f5f-d3cf-432b-8c0f-3dcd957b2042",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "b5978c20-271c-4ac4-8407-8b3fd3c0bb86",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricBamqc from 2022-04-29",
                                "@type": [
                                    "QualityMetricBamqc",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-bamqc/b5978c20-271c-4ac4-8407-8b3fd3c0bb86/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "principals_allowed": {
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
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                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_bam"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "regions",
                "source": [
                    {
                        "name": "regions",
                        "for_file": "/files-reference/GAPFIBGEOI72/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1c07a3aa-e2a3-498c-b838-15991c4a2f28",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIBGEOI72.txt",
                            "file_size": 7603,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIBGEOI72/",
                            "status": "uploaded",
                            "principals_allowed": {
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "regions"
                        }
                    ]
                }
            },
            {
                "name": "nthreads",
                "source": [
                    {
                        "name": "nthreads"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            }
        ],
        "outputs": [
            {
                "name": "gvcf",
                "target": [
                    {
                        "name": "gvcf",
                        "for_file": "/files-processed/GAPFIH71G455/",
                        "step": 9
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFIH71G455.gvcf.gz",
                            "uuid": "1e51aea4-7fc1-4936-852a-83fbae9f34ff",
                            "file_format": {
                                "@type": [
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                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "gvcf_gz",
                                "uuid": "ad47d469-4561-4234-bce2-820f08f58e7c",
                                "@id": "/file-formats/gvcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 2212472843,
                            "@id": "/files-processed/GAPFIH71G455/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "59fc114b-ccd6-416d-9555-4d2270c4c3dd",
                                    "@id": "/workflow-runs-awsem/59fc114b-ccd6-416d-9555-4d2270c4c3dd/",
                                    "display_title": "workflow_gatk-CombineGVCFs v1.0.0 run 2022-04-29 19:55:36.043928",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
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                                    "group.admin",
                                    "group.read-only-admin",
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                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
    {
        "name": 10,
        "meta": {
            "@id": "/workflow-runs-awsem/a59335b9-d462-4578-b718-0fc54428cc77/",
            "workflow": {
                "uuid": "00035e35-be9c-41c6-9aa9-a0e0b49d0759",
                "status": "in review",
                "display_title": "Run gatk HaplotypeCaller - GAPWFO65T9P3",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/00035e35-be9c-41c6-9aa9-a0e0b49d0759/",
                "principals_allowed": {
                    "view": [
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                        "group.admin",
                        "group.read-only-admin",
                        "remoteuser.EMBED",
                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_bam",
                "source": [
                    {
                        "name": "input_bams",
                        "for_file": "/files-processed/GAPFICEE9LEN/",
                        "step": 5
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "6d199319-3719-4a42-8883-365072bc13b3",
                            "file_format": {
                                "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c",
                                "display_title": "bam",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/bam/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFICEE9LEN.bam",
                            "file_size": 104992897560,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFICEE9LEN/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_sentieon_dedup-recal v1.0.0 run 2022-04-29 04:25:39.481922",
                                    "@type": [
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                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/25d04009-a2fe-481b-ada7-da5c1216d52e/",
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                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "23408f2f-13ca-49d6-b8bf-162623795dd6",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricBamqc from 2022-04-29",
                                "@type": [
                                    "QualityMetricBamqc",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-bamqc/23408f2f-13ca-49d6-b8bf-162623795dd6/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
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                                }
                            },
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                                    "remoteuser.INDEXER"
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                                "edit": [
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                                    "group.admin"
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                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_bam"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
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                                "view": [
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "regions",
                "source": [
                    {
                        "name": "regions",
                        "for_file": "/files-reference/GAPFIBGEOI72/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
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                            "uuid": "1c07a3aa-e2a3-498c-b838-15991c4a2f28",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
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                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIBGEOI72.txt",
                            "file_size": 7603,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIBGEOI72/",
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                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "regions"
                        }
                    ]
                }
            },
            {
                "name": "nthreads",
                "source": [
                    {
                        "name": "nthreads"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            }
        ],
        "outputs": [
            {
                "name": "gvcf",
                "target": [
                    {
                        "name": "gvcf",
                        "for_file": "/files-processed/GAPFIXEYX9Q1/",
                        "step": 9
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                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
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                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFIXEYX9Q1.gvcf.gz",
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                            "file_format": {
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                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "gvcf_gz",
                                "uuid": "ad47d469-4561-4234-bce2-820f08f58e7c",
                                "@id": "/file-formats/gvcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 2200279777,
                            "@id": "/files-processed/GAPFIXEYX9Q1/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "59fc114b-ccd6-416d-9555-4d2270c4c3dd",
                                    "@id": "/workflow-runs-awsem/59fc114b-ccd6-416d-9555-4d2270c4c3dd/",
                                    "display_title": "workflow_gatk-CombineGVCFs v1.0.0 run 2022-04-29 19:55:36.043928",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
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                                        ]
                                    }
                                }
                            ],
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
    {
        "name": 11,
        "meta": {
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            "workflow": {
                "uuid": "00035e35-be9c-41c6-9aa9-a0e0b49d0759",
                "status": "in review",
                "display_title": "Run gatk HaplotypeCaller - GAPWFO65T9P3",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/00035e35-be9c-41c6-9aa9-a0e0b49d0759/",
                "principals_allowed": {
                    "view": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
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                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_bam",
                "source": [
                    {
                        "name": "input_bams",
                        "for_file": "/files-processed/GAPFITNHTOZI/",
                        "step": 7
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "222ce0eb-22f8-40e3-87d5-f2708ad18393",
                            "file_format": {
                                "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c",
                                "display_title": "bam",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/bam/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFITNHTOZI.bam",
                            "file_size": 111610806810,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFITNHTOZI/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_sentieon_dedup-recal v1.0.0 run 2022-04-29 04:25:46.368031",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/d4b58584-ecc6-41ad-a0ce-81d4b600b033/",
                                    "uuid": "d4b58584-ecc6-41ad-a0ce-81d4b600b033",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "5530ced5-5252-42f2-afde-0d14e30a669b",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricBamqc from 2022-04-29",
                                "@type": [
                                    "QualityMetricBamqc",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-bamqc/5530ced5-5252-42f2-afde-0d14e30a669b/",
                                "principals_allowed": {
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                            },
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                                    "remoteuser.INDEXER"
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                                    "group.admin"
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                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_bam"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "regions",
                "source": [
                    {
                        "name": "regions",
                        "for_file": "/files-reference/GAPFIBGEOI72/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1c07a3aa-e2a3-498c-b838-15991c4a2f28",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIBGEOI72.txt",
                            "file_size": 7603,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIBGEOI72/",
                            "status": "uploaded",
                            "principals_allowed": {
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                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
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                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "regions"
                        }
                    ]
                }
            },
            {
                "name": "nthreads",
                "source": [
                    {
                        "name": "nthreads"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            }
        ],
        "outputs": [
            {
                "name": "gvcf",
                "target": [
                    {
                        "name": "gvcf",
                        "for_file": "/files-processed/GAPFINHTTKUZ/",
                        "step": 9
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
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                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFINHTTKUZ.gvcf.gz",
                            "uuid": "ed25677e-f2d6-4429-b9d2-300a36cff6ed",
                            "file_format": {
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "gvcf_gz",
                                "uuid": "ad47d469-4561-4234-bce2-820f08f58e7c",
                                "@id": "/file-formats/gvcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 2250854837,
                            "@id": "/files-processed/GAPFINHTTKUZ/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "59fc114b-ccd6-416d-9555-4d2270c4c3dd",
                                    "@id": "/workflow-runs-awsem/59fc114b-ccd6-416d-9555-4d2270c4c3dd/",
                                    "display_title": "workflow_gatk-CombineGVCFs v1.0.0 run 2022-04-29 19:55:36.043928",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
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                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
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                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
    {
        "name": 3,
        "meta": {
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            "workflow": {
                "uuid": "14eb6324-1ac2-40fd-9f39-de7f46604763",
                "status": "in review",
                "display_title": "Create a tar archive of rck files and an associate index file - GAPW9IDRLG31",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/14eb6324-1ac2-40fd-9f39-de7f46604763/",
                "principals_allowed": {
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                        "remoteuser.INDEXER"
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                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_rcks",
                "source": [
                    {
                        "name": "rck",
                        "for_file": "/files-processed/GAPFI9CNINA2/",
                        "step": 1
                    },
                    {
                        "name": "rck",
                        "for_file": "/files-processed/GAPFID5AE9ME/",
                        "step": 4
                    },
                    {
                        "name": "rck",
                        "for_file": "/files-processed/GAPFI5T4QIBP/",
                        "step": 6
                    }
                ],
                "meta": {
                    "global": false,
                    "type": "data file"
                },
                "run_data": {
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                                    "Item"
                                ],
                                "@id": "/file-formats/rck_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
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                                    ]
                                }
                            },
                            "display_title": "GAPFI9CNINA2.rck.gz",
                            "file_size": 11922164723,
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                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFI9CNINA2/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_granite-mpileupCounts v1.0.0 run 2022-04-29 17:10:35.675189",
                                    "@type": [
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                                        "WorkflowRun",
                                        "Item"
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                                    "@id": "/workflow-runs-awsem/d9b35c06-6911-4b67-ac04-395331a98e55/",
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                                    }
                                }
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                                    "remoteuser.INDEXER"
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                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
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                            }
                        },
                        {
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                                    "view": [
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                                    ],
                                    "edit": [
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                                    ]
                                }
                            },
                            "display_title": "GAPFID5AE9ME.rck.gz",
                            "file_size": 11874191792,
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                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFID5AE9ME/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_granite-mpileupCounts v1.0.0 run 2022-04-29 17:10:38.581075",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/8bca34d8-54c4-4de8-9057-ffb868d44795/",
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                                }
                            ],
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                                    "remoteuser.INDEXER"
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                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        },
                        {
                            "uuid": "87e8832d-9ece-439a-8602-152b1ee74b0f",
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                                "display_title": "rck_gz",
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                                    "Item"
                                ],
                                "@id": "/file-formats/rck_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFI5T4QIBP.rck.gz",
                            "file_size": 12086253767,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFI5T4QIBP/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_granite-mpileupCounts v1.0.0 run 2022-04-29 17:10:45.405166",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/e93fc945-f186-41e0-a0c3-b19a007ce81c/",
                                    "uuid": "e93fc945-f186-41e0-a0c3-b19a007ce81c",
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                                        "view": [
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                                        ],
                                        "edit": [
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                                        ]
                                    }
                                }
                            ],
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                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_rcks"
                        },
                        {
                            "ordinal": 2,
                            "dimension": "1",
                            "workflow_argument_name": "input_rcks"
                        },
                        {
                            "ordinal": 3,
                            "dimension": "2",
                            "workflow_argument_name": "input_rcks"
                        }
                    ]
                }
            }
        ],
        "outputs": [
            {
                "name": "rck_tar",
                "target": [
                    {
                        "name": "rck_tar",
                        "for_file": "/files-processed/GAPFI7TBYWC7/",
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                    }
                ],
                "meta": {
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                "run_data": {
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                            "status": "uploaded",
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                                "status": "shared",
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                                    ],
                                    "edit": [
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                                    ]
                                }
                            },
                            "file_size": 35891374080,
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                                        "Item"
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                                    "uuid": "2160c911-2d1b-466b-9643-ed30c74228a8",
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                                    "display_title": "workflow_granite-novoCaller-rck-check v1.0.0 run 2022-04-30 02:55:36.042917",
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                    ],
                    "meta": [
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                    ]
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        ]
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                "status": "in review",
                "display_title": "Run gatk CombineGVCFs - GAPWFR81TL9K",
                "@type": [
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                "@id": "/workflows/dce317eb-8dcf-4ea3-94ef-6a4a4fbe4bed/",
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                    "edit": [
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                }
            },
            "analysis_types": "dummy analysis type"
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        "inputs": [
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                        "for_file": "/files-processed/GAPFIH71G455/",
                        "step": 8
                    },
                    {
                        "name": "gvcf",
                        "for_file": "/files-processed/GAPFIXEYX9Q1/",
                        "step": 10
                    },
                    {
                        "name": "gvcf",
                        "for_file": "/files-processed/GAPFINHTTKUZ/",
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                    }
                ],
                "meta": {
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                                    "Item"
                                ],
                                "@id": "/file-formats/gvcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIH71G455.gvcf.gz",
                            "file_size": 2212472843,
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                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIH71G455/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_gatk-HaplotypeCaller v1.0.0 run 2022-04-29 17:10:52.092723",
                                    "@type": [
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                        },
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                                "display_title": "gvcf_gz",
                                "@type": [
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                                    "Item"
                                ],
                                "@id": "/file-formats/gvcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXEYX9Q1.gvcf.gz",
                            "file_size": 2200279777,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIXEYX9Q1/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_gatk-HaplotypeCaller v1.0.0 run 2022-04-29 17:10:58.741225",
                                    "@type": [
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                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/a59335b9-d462-4578-b718-0fc54428cc77/",
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                                        "edit": [
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                                        ]
                                    }
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        },
                        {
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                                "display_title": "gvcf_gz",
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                                    "Item"
                                ],
                                "@id": "/file-formats/gvcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFINHTTKUZ.gvcf.gz",
                            "file_size": 2250854837,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFINHTTKUZ/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_gatk-HaplotypeCaller v1.0.0 run 2022-04-29 17:11:05.391428",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/3f8e7c4e-254b-4981-81c8-d54821b0676c/",
                                    "uuid": "3f8e7c4e-254b-4981-81c8-d54821b0676c",
                                    "principals_allowed": {
                                        "view": [
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                                        ],
                                        "edit": [
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                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
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                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_gvcfs"
                        },
                        {
                            "ordinal": 2,
                            "dimension": "1",
                            "workflow_argument_name": "input_gvcfs"
                        },
                        {
                            "ordinal": 3,
                            "dimension": "2",
                            "workflow_argument_name": "input_gvcfs"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "chromosomes",
                "source": [
                    {
                        "name": "chromosomes",
                        "for_file": "/files-reference/GAPFIGJVJDUY/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "a1d504ee-a313-4064-b6ae-65fed9738980",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIGJVJDUY.txt",
                            "file_size": 138,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIGJVJDUY/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "chromosomes"
                        }
                    ]
                }
            }
        ],
        "outputs": [
            {
                "name": "combined_gvcf",
                "target": [
                    {
                        "name": "combined_gvcf",
                        "for_file": "/files-processed/GAPFI4589EXS/",
                        "step": 13
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
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                            "display_title": "GAPFI4589EXS.gvcf.gz",
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                                    "Item"
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                                "status": "shared",
                                "display_title": "gvcf_gz",
                                "uuid": "ad47d469-4561-4234-bce2-820f08f58e7c",
                                "@id": "/file-formats/gvcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 6071718531,
                            "@id": "/files-processed/GAPFI4589EXS/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "3e3530ef-c67d-4708-be5f-84349f49b182",
                                    "@id": "/workflow-runs-awsem/3e3530ef-c67d-4708-be5f-84349f49b182/",
                                    "display_title": "workflow_gatk-GenotypeGVCFs-check v1.0.0 run 2022-04-29 21:10:40.235957",
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                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
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                                    "group.read-only-admin",
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                                    "remoteuser.INDEXER"
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                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
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                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
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                    ]
                }
            }
        ]
    },
    {
        "name": 13,
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            "@id": "/workflow-runs-awsem/3e3530ef-c67d-4708-be5f-84349f49b182/",
            "workflow": {
                "uuid": "bf34d8b4-1b76-4f76-869b-7310537d0998",
                "status": "in review",
                "display_title": "Run gatk GenotypeGVCFs plus output integrity-check - GAPWF2H256PZ",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/bf34d8b4-1b76-4f76-869b-7310537d0998/",
                "principals_allowed": {
                    "view": [
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                        "group.read-only-admin",
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                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_gvcf",
                "source": [
                    {
                        "name": "combined_gvcf",
                        "for_file": "/files-processed/GAPFI4589EXS/",
                        "step": 9
                    }
                ],
                "meta": {
                    "global": false,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "2021801b-9f49-4fc9-9e86-9b8046edd5e9",
                            "file_format": {
                                "uuid": "ad47d469-4561-4234-bce2-820f08f58e7c",
                                "display_title": "gvcf_gz",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/gvcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFI4589EXS.gvcf.gz",
                            "file_size": 6071718531,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFI4589EXS/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_gatk-CombineGVCFs v1.0.0 run 2022-04-29 19:55:36.043928",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/59fc114b-ccd6-416d-9555-4d2270c4c3dd/",
                                    "uuid": "59fc114b-ccd6-416d-9555-4d2270c4c3dd",
                                    "principals_allowed": {
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                                        ],
                                        "edit": [
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                                        ]
                                    }
                                }
                            ],
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_gvcf"
                        }
                    ]
                }
            },
            {
                "name": "reference",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
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                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "reference"
                        }
                    ]
                }
            },
            {
                "name": "chromosomes",
                "source": [
                    {
                        "name": "chromosomes",
                        "for_file": "/files-reference/GAPFIGJVJDUY/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "a1d504ee-a313-4064-b6ae-65fed9738980",
                            "file_format": {
                                "uuid": "0cd4e777-a596-4927-95c8-b07716121aa3",
                                "display_title": "txt",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/txt/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIGJVJDUY.txt",
                            "file_size": 138,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIGJVJDUY/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "chromosomes"
                        }
                    ]
                }
            },
            {
                "name": "known-sites-snp",
                "source": [
                    {
                        "name": "known-sites-snp",
                        "for_file": "/files-reference/GAPFI4LJRN98/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "8ed35691-0af4-467a-adbc-81eb088549f0",
                            "file_format": {
                                "uuid": "1b8f525f-aecb-4211-9ae5-a2c998b05599",
                                "display_title": "vcf_gz",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/vcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFI4LJRN98.vcf.gz",
                            "file_size": 1595848625,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFI4LJRN98/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "known-sites-snp"
                        }
                    ]
                }
            }
        ],
        "outputs": [
            {
                "name": "vcf",
                "target": [
                    {
                        "name": "vcf",
                        "for_file": "/files-processed/GAPFI6J5MLR9/",
                        "step": 14
                    },
                    {
                        "name": "vcf",
                        "for_file": "/files-processed/GAPFI6J5MLR9/",
                        "step": 15
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFI6J5MLR9.vcf.gz",
                            "uuid": "a6c9f1f0-e52a-4c3b-bc91-047462bf4d88",
                            "file_format": {
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "vcf_gz",
                                "uuid": "1b8f525f-aecb-4211-9ae5-a2c998b05599",
                                "@id": "/file-formats/vcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 449938897,
                            "@id": "/files-processed/GAPFI6J5MLR9/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "quality_metric": {
                                "uuid": "ede965e7-0c0f-4f7b-b7f8-2d47c2dbe36b",
                                "@type": [
                                    "QualityMetricQclist",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "display_title": "QualityMetricQclist from 2022-04-29",
                                "@id": "/quality-metrics-qclist/ede965e7-0c0f-4f7b-b7f8-2d47c2dbe36b/",
                                "overall_quality_status": "PASS",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "6aea60a0-18c8-4e4d-9a1c-fd993346baf2",
                                    "@id": "/workflow-runs-awsem/6aea60a0-18c8-4e4d-9a1c-fd993346baf2/",
                                    "display_title": "workflow_samplegeno v1.0.0 run 2022-04-29 22:10:36.226203",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                },
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "bf1f8c90-5f99-435f-85c9-52ac471de600",
                                    "@id": "/workflow-runs-awsem/bf1f8c90-5f99-435f-85c9-52ac471de600/",
                                    "display_title": "workflow_granite-qcVCF v1.0.0 run 2022-04-29 22:10:39.971610",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
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                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
    {
        "name": 14,
        "meta": {
            "@id": "/workflow-runs-awsem/6aea60a0-18c8-4e4d-9a1c-fd993346baf2/",
            "workflow": {
                "uuid": "068446c4-87f9-48a1-8f46-cf05084392a9",
                "status": "in review",
                "display_title": "Add samplegeno - GAPGLK9R65ML",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/068446c4-87f9-48a1-8f46-cf05084392a9/",
                "principals_allowed": {
                    "view": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin",
                        "group.read-only-admin",
                        "remoteuser.EMBED",
                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_vcf",
                "source": [
                    {
                        "name": "vcf",
                        "for_file": "/files-processed/GAPFI6J5MLR9/",
                        "step": 13
                    }
                ],
                "meta": {
                    "global": false,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "a6c9f1f0-e52a-4c3b-bc91-047462bf4d88",
                            "file_format": {
                                "uuid": "1b8f525f-aecb-4211-9ae5-a2c998b05599",
                                "display_title": "vcf_gz",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/vcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFI6J5MLR9.vcf.gz",
                            "file_size": 449938897,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFI6J5MLR9/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_gatk-GenotypeGVCFs-check v1.0.0 run 2022-04-29 21:10:40.235957",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/3e3530ef-c67d-4708-be5f-84349f49b182/",
                                    "uuid": "3e3530ef-c67d-4708-be5f-84349f49b182",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "ede965e7-0c0f-4f7b-b7f8-2d47c2dbe36b",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricQclist from 2022-04-29",
                                "@type": [
                                    "QualityMetricQclist",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-qclist/ede965e7-0c0f-4f7b-b7f8-2d47c2dbe36b/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_vcf"
                        }
                    ]
                }
            }
        ],
        "outputs": [
            {
                "name": "samplegeno_vcf",
                "target": [
                    {
                        "name": "samplegeno_vcf",
                        "for_file": "/files-processed/GAPFI68EKBY2/",
                        "step": 16
                    },
                    {
                        "name": "samplegeno_vcf",
                        "for_file": "/files-processed/GAPFI68EKBY2/",
                        "step": 17
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
                    "file": [
                        {
                            "status": "uploaded",
                            "display_title": "GAPFI68EKBY2.vcf.gz",
                            "uuid": "56c0a779-c771-4a67-acce-f7bbc2707d6e",
                            "file_format": {
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "vcf_gz",
                                "uuid": "1b8f525f-aecb-4211-9ae5-a2c998b05599",
                                "@id": "/file-formats/vcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 565028521,
                            "@id": "/files-processed/GAPFI68EKBY2/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "quality_metric": {
                                "uuid": "367b0795-c6f2-4ce3-85e2-b63f4d1b1b4a",
                                "@type": [
                                    "QualityMetricVcfqc",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "display_title": "QualityMetricVcfqc from 2022-04-29",
                                "@id": "/quality-metrics-vcfqc/367b0795-c6f2-4ce3-85e2-b63f4d1b1b4a/",
                                "overall_quality_status": "PASS",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
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                                    ],
                                    "edit": [
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                                }
                            },
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                                "Item"
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                "meta": {
                    "global": true,
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                },
                "run_data": {
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            }
        ],
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                            "display_title": "GAPFI5MKCART.txt",
                            "file_size": 349968,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFI5MKCART/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "genes"
                        }
                    ]
                }
            },
            {
                "name": "aftag",
                "source": [
                    {
                        "name": "variant_filtering_aftag"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            },
            {
                "name": "afthr",
                "source": [
                    {
                        "name": "variant_filtering_afthr"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            }
        ],
        "outputs": [
            {
                "name": "merged_vcf",
                "target": [
                    {
                        "name": "merged_vcf",
                        "for_file": "/files-processed/GAPFIF8PBOT6/",
                        "step": 21
                    },
                    {
                        "name": "merged_vcf",
                        "for_file": "/files-processed/GAPFIF8PBOT6/",
                        "step": 12
                    }
                ],
                "meta": {
                    "type": "data file"
                },
                "run_data": {
                    "type": "output",
                    "file": [
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                            "status": "uploaded",
                            "display_title": "GAPFIF8PBOT6.vcf.gz",
                            "uuid": "c11cb753-5ae1-4298-b714-e30b67b46653",
                            "file_format": {
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "status": "shared",
                                "display_title": "vcf_gz",
                                "uuid": "1b8f525f-aecb-4211-9ae5-a2c998b05599",
                                "@id": "/file-formats/vcf_gz/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "file_size": 4212759,
                            "@id": "/files-processed/GAPFIF8PBOT6/",
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "quality_metric": {
                                "uuid": "22c5255f-ef08-4660-8524-887067eebb2e",
                                "@type": [
                                    "QualityMetricQclist",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "display_title": "QualityMetricQclist from 2022-04-30",
                                "@id": "/quality-metrics-qclist/22c5255f-ef08-4660-8524-887067eebb2e/",
                                "overall_quality_status": "PASS",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "workflow_run_inputs": [
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "99c36be0-a667-456a-9b8c-b08bb3b4da17",
                                    "@id": "/workflow-runs-awsem/99c36be0-a667-456a-9b8c-b08bb3b4da17/",
                                    "display_title": "workflow_granite-qcVCF v1.0.0 run 2022-04-30 02:55:39.004849",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                },
                                {
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "2160c911-2d1b-466b-9643-ed30c74228a8",
                                    "@id": "/workflow-runs-awsem/2160c911-2d1b-466b-9643-ed30c74228a8/",
                                    "display_title": "workflow_granite-novoCaller-rck-check v1.0.0 run 2022-04-30 02:55:36.042917",
                                    "status": "shared",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
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                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "type": "Output processed file"
                        }
                    ]
                }
            }
        ]
    },
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        "name": 12,
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            "workflow": {
                "uuid": "4903b64d-ec78-4673-8bc9-cfd16d1cc0c1",
                "status": "in review",
                "display_title": "Run granite novoCaller using rck files plus output integrity-check - GAPS8LJG3FDL",
                "@type": [
                    "Workflow",
                    "Item"
                ],
                "@id": "/workflows/4903b64d-ec78-4673-8bc9-cfd16d1cc0c1/",
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                    "view": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin",
                        "group.read-only-admin",
                        "remoteuser.EMBED",
                        "remoteuser.INDEXER"
                    ],
                    "edit": [
                        "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_vcf",
                "source": [
                    {
                        "name": "merged_vcf",
                        "for_file": "/files-processed/GAPFIF8PBOT6/",
                        "step": 19
                    }
                ],
                "meta": {
                    "global": false,
                    "type": "data file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "c11cb753-5ae1-4298-b714-e30b67b46653",
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                                "display_title": "vcf_gz",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/vcf_gz/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIF8PBOT6.vcf.gz",
                            "file_size": 4212759,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIF8PBOT6/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_granite-filtering-check v1.0.0 run 2022-04-30 02:10:40.339145",
                                    "@type": [
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                                        "WorkflowRun",
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                                    }
                                }
                            ],
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                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricQclist from 2022-04-30",
                                "@type": [
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                                    "QualityMetric",
                                    "Item"
                                ],
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                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
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                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_vcf"
                        }
                    ]
                }
            },
            {
                "name": "unrelated",
                "source": [
                    {
                        "name": "unrelated",
                        "for_file": "/files-reference/GAPFIMO8Y4PZ/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
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                            "uuid": "eac862c0-8c87-4838-83cb-9a77412bff6f",
                            "file_format": {
                                "uuid": "39f836d8-bbb1-46c7-80d4-e321d4a44204",
                                "display_title": "rck_tar",
                                "@type": [
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                                    "Item"
                                ],
                                "@id": "/file-formats/rck_tar/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIMO8Y4PZ.rck.tar",
                            "file_size": 209874647040,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIMO8Y4PZ/",
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                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
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                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "unrelated"
                        }
                    ]
                }
            },
            {
                "name": "trio",
                "source": [
                    {
                        "name": "rck_tar",
                        "for_file": "/files-processed/GAPFI7TBYWC7/",
                        "step": 3
                    }
                ],
                "meta": {
                    "global": false,
                    "type": "data file"
                },
                "run_data": {
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                    "file": [
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                            "uuid": "3e8a17d1-e07f-4226-bd6a-a4ca13606528",
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                                "display_title": "rck_tar",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/rck_tar/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFI7TBYWC7.rck.tar",
                            "file_size": 35891374080,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFI7TBYWC7/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_granite-rckTar v1.0.0 run 2022-04-29 21:10:35.118284",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/6fb5a7f0-2156-49e3-bf42-95f4e8decdde/",
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                                    }
                                }
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                                    "remoteuser.INDEXER"
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                                "edit": [
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                    "meta": [
                        {
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                            "workflow_argument_name": "trio"
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                    ]
                }
            }
        ],
        "outputs": [
            {
                "name": "novoCaller_vcf",
                "target": [
                    {
                        "name": "novoCaller_vcf",
                        "for_file": "/files-processed/GAPFIRZZWDQL/",
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                    {
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                ],
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                                    ],
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                            },
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                            "quality_metric": {
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                                    "uuid": "31fad2bc-d98e-446e-8cc5-a695aee8ba47",
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                                    "display_title": "workflow_granite-qcVCF v1.0.0 run 2022-04-30 05:10:33.627859",
                                    "status": "shared",
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                                    }
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                                    "display_title": "workflow_granite-comHet-check v1.0.0 run 2022-04-30 05:10:39.280286",
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            "workflow": {
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                "status": "in review",
                "display_title": "Run granite qcVCF - GAPXFAL93FS1",
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                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
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                    }
                ],
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                "run_data": {
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                        {
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                            "workflow_argument_name": "dbSNP_ref_vcf"
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                            "uuid": "297c872a-5b6b-4fc3-83d3-f4a853f8805c",
                            "file_format": {
                                "uuid": "dd1ef82d-da5e-4680-bd5c-cf471a87eb5b",
                                "display_title": "chain",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/chain/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIYPTSAU8.chain.gz",
                            "file_size": 1246411,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIYPTSAU8/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
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                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "chainfile"
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                    ]
                }
            }
        ],
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            {
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                "target": [
                    {
                        "name": "vcf",
                        "for_file": "/files-processed/GAPFIRGHPIDQ/",
                        "step": 28
                    },
                    {
                        "name": "vcf",
                        "for_file": "/files-processed/GAPFIRGHPIDQ/",
                        "step": 29
                    }
                ],
                "meta": {
                    "type": "data file"
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                                    "edit": [
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                                }
                            },
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                            ],
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                                "principals_allowed": {
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                                    ],
                                    "edit": [
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                                }
                            },
                            "workflow_run_inputs": [
                                {
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                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "uuid": "b847a5ad-670e-4b3c-92be-a1d3e9951b99",
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                                    }
                                },
                                {
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                                        "WorkflowRun",
                                        "Item"
                                    ],
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                                    "display_title": "bamsnap v1.0.0 run 2022-04-30 06:40:40.145843",
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                            }
                        }
                    ],
                    "meta": [
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                            "type": "Output processed file"
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                    ]
                }
            }
        ]
    },
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                    ],
                    "edit": [
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                        "group.admin"
                    ]
                }
            },
            "analysis_types": "dummy analysis type"
        },
        "inputs": [
            {
                "name": "input_vcf",
                "source": [
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                        "for_file": "/files-processed/GAPFIRGHPIDQ/",
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                    }
                ],
                "meta": {
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                                    ],
                                    "edit": [
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                                }
                            },
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                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIRGHPIDQ/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
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                                    "status": "shared",
                                    "display_title": "workflow_hg19lo_hgvsg-check v1.0.0 run 2022-04-30 06:10:40.434728",
                                    "@type": [
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                    "meta": [
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                    ]
                }
            },
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                ],
                "meta": {
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                    "type": "parameter"
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                "run_data": {
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            },
            {
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                ],
                "meta": {
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                "run_data": {
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            },
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                ],
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                "run_data": {
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            },
            {
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                ],
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            },
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                "meta": {
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            },
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                    {
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                    {
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                                "File",
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                            ],
                            "@id": "/files-processed/GAPFIMIARUOB/",
                            "status": "uploaded",
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                                "File",
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                            ],
                            "@id": "/files-processed/GAPFICEE9LEN/",
                            "status": "uploaded",
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                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIRGHPIDQ.vcf.gz",
                            "file_size": 5196340,
                            "@type": [
                                "FileProcessed",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-processed/GAPFIRGHPIDQ/",
                            "status": "uploaded",
                            "workflow_run_outputs": [
                                {
                                    "status": "shared",
                                    "display_title": "workflow_hg19lo_hgvsg-check v1.0.0 run 2022-04-30 06:10:40.434728",
                                    "@type": [
                                        "WorkflowRunAwsem",
                                        "WorkflowRun",
                                        "Item"
                                    ],
                                    "@id": "/workflow-runs-awsem/5df3ef23-0e93-4510-8ebb-63ebcc1214a7/",
                                    "uuid": "5df3ef23-0e93-4510-8ebb-63ebcc1214a7",
                                    "principals_allowed": {
                                        "view": [
                                            "system.Authenticated"
                                        ],
                                        "edit": [
                                            "group.admin"
                                        ]
                                    }
                                }
                            ],
                            "quality_metric": {
                                "uuid": "ac83094c-6bb2-4754-9573-ec6f9dc74ee5",
                                "overall_quality_status": "PASS",
                                "display_title": "QualityMetricQclist from 2022-04-30",
                                "@type": [
                                    "QualityMetricQclist",
                                    "QualityMetric",
                                    "Item"
                                ],
                                "status": "shared",
                                "@id": "/quality-metrics-qclist/ac83094c-6bb2-4754-9573-ec6f9dc74ee5/",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "input_vcf"
                        }
                    ]
                }
            },
            {
                "name": "ref",
                "source": [
                    {
                        "name": "reference_fa",
                        "for_file": "/files-reference/GAPFIXRDPDK5/"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "reference file"
                },
                "run_data": {
                    "type": "input",
                    "file": [
                        {
                            "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7",
                            "file_format": {
                                "uuid": "5ced774b-a73e-4d1b-8186-d7fbbde7a3c2",
                                "display_title": "fa",
                                "@type": [
                                    "FileFormat",
                                    "Item"
                                ],
                                "@id": "/file-formats/fa/",
                                "status": "shared",
                                "principals_allowed": {
                                    "view": [
                                        "system.Authenticated"
                                    ],
                                    "edit": [
                                        "group.admin"
                                    ]
                                }
                            },
                            "display_title": "GAPFIXRDPDK5.fa",
                            "file_size": 3263683042,
                            "@type": [
                                "FileReference",
                                "File",
                                "Item"
                            ],
                            "@id": "/files-reference/GAPFIXRDPDK5/",
                            "status": "uploaded",
                            "principals_allowed": {
                                "view": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin",
                                    "group.read-only-admin",
                                    "remoteuser.EMBED",
                                    "remoteuser.INDEXER"
                                ],
                                "edit": [
                                    "editor_for.12a92962-8265-4fc0-b2f8-cf14f05db58b",
                                    "group.admin"
                                ]
                            }
                        }
                    ],
                    "meta": [
                        {
                            "ordinal": 1,
                            "dimension": "0",
                            "workflow_argument_name": "ref"
                        }
                    ]
                }
            },
            {
                "name": "nproc",
                "source": [
                    {
                        "name": "nproc"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            },
            {
                "name": "titles",
                "source": [
                    {
                        "name": "bamsnap_titles"
                    }
                ],
                "meta": {
                    "global": true,
                    "type": "parameter"
                },
                "run_data": {
                    "type": "parameter"
                }
            }
        ],
        "outputs": []
    }
]