import { SequenceAlignments, QueryAlignmentsArgs, SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
import { RcsbQueryGroupAlignmentArguments } from "../../RcsbGraphQL/RcsbQueryAlignment";
import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
interface CommonAlignmentInterface {
    externalTrackBuilder?: ExternalTrackBuilderInterface;
    filterByTargetContains?: string;
    dynamicDisplay?: boolean;
    excludeAlignmentLinks?: boolean;
    fitTitleWidth?: boolean;
    excludeFirstRowLink?: boolean;
}
type QueryAlignmentArgsTypes = {
    [K in keyof QueryAlignmentsArgs]: NonNullable<QueryAlignmentsArgs[K]>;
};
export interface CollectAlignmentInterface extends QueryAlignmentArgsTypes, CommonAlignmentInterface {
}
export interface CollectGroupAlignmentInterface extends RcsbQueryGroupAlignmentArguments, CommonAlignmentInterface {
    sequencePrefix: string;
    from?: SequenceReference;
    to?: SequenceReference;
}
export type AlignmentCollectConfig = Partial<CollectAlignmentInterface & CollectGroupAlignmentInterface>;
export interface AlignmentCollectorInterface {
    getTargets(): Promise<Array<string>>;
    getAlignment(): Promise<SequenceAlignments>;
    getAlignmentLength(): Promise<number>;
    collect(requestConfig: AlignmentCollectConfig, filter?: Array<string>): Promise<SequenceAlignments>;
}
export {};