import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
import { TrackFactoryInterface } from "../TrackFactoryInterface";
import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
export declare class PlainObservedAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
    private alignmentTrackFactory;
    private unObservedResidues;
    private readonly instanceEntityMap;
    private readonly entityInstanceNumberMap;
    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
    getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<RcsbFvRowConfigInterface>;
    prepareFeatures(unObservedRegions: Array<SequenceAnnotations>): Promise<void>;
    private collectFeatureEntryProperties;
    private prepareFeaturesAlignmentMap;
    private alignedRegionToTrackElementList;
}