import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
export interface AlignmentContextInterface {
    queryId: string;
    targetId: string;
    from: SequenceReference | undefined;
    to: SequenceReference | AnnotationReference | undefined;
    targetSequenceLength?: number;
    querySequenceLength?: number;
}
export declare class PolymerEntityInstanceTranslate {
    private readonly rawData;
    private readonly instanceAsymToAuth;
    private readonly instanceAuthToAsym;
    private readonly instanceAsymToEntity;
    private readonly entityToAsym;
    private readonly instanceAuthResIds;
    private readonly INDEX_NAME;
    constructor(data: Array<PolymerEntityInstanceInterface>);
    getData(): Array<PolymerEntityInstanceInterface>;
    translateEntityToAsym(id: string): string[] | undefined;
    translateAsymToEntity(id: string): string | undefined;
    translateAsymToAuth(id: string): string | undefined;
    translateAuthToAsym(id: string): string | undefined;
    translateAuthResId(asymId: string, index: number): string | undefined;
    addAuthorResIds(e: RcsbFvTrackDataElementInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;
    private helperAddAuthorResIds;
}