@wikipathways/pvjs/es5/Pvjs.js

"use strict";
var __extends = (this && this.__extends) || (function () {
    var extendStatics = Object.setPrototypeOf ||
        ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
        function (d, b) { for (var p in b) if (b.hasOwnProperty(p)) d[p] = b[p]; };
    return function (d, b) {
        extendStatics(d, b);
        function __() { this.constructor = d; }
        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
    };
})();
var __assign = (this && this.__assign) || Object.assign || function(t) {
    for (var s, i = 1, n = arguments.length; i < n; i++) {
        s = arguments[i];
        for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
            t[p] = s[p];
    }
    return t;
};
Object.defineProperty(exports, "__esModule", { value: true });
//import { BridgeDb, XrefsAnnotationPanel } from "bridgedb";
var React = require("react");
// TODO look at how to properly import this so it works
// for both es5, esnext, tree-shaking, etc.
//import { Kaavio } from "kaavio";
var Kaavio_1 = require("kaavio/esnext/Kaavio");
// The edge drawing definitions are in Kaavio because they can be generically used.
// But the icons and markers are specific to Pvjs (less likely to useful to other applications).
var theme = require("./themes/plain/theme");
var ContainerCustomStyle = require("./themes/styles/Container.css");
var DiagramCustomStylePlain = require("./themes/styles/Diagram.plain.css");
var DiagramCustomStyleDark = require("./themes/styles/Diagram.dark.css");
var diagramStyles = {
    plain: DiagramCustomStylePlain,
    dark: DiagramCustomStyleDark
};
// TODO use TS types updated for version 16. But I also have some changes
// I made for SVG attributes that need to get merged.
var Fragment = React["Fragment"];
// TODO move this into utils
// Create a string of citation numbers for display,
// delimited by commas, and
// replacing any consecutive series of numbers with the
// first and last joined by a hyphen.
function createPublicationXrefString(displayNumbers) {
    var publicationXrefString;
    if (displayNumbers.length === 1) {
        publicationXrefString = displayNumbers[0];
    }
    else {
        displayNumbers.sort(function (a, b) {
            return a - b;
        });
        var i = 0;
        publicationXrefString = displayNumbers[i].toString();
        if (displayNumbers.length > 2) {
            do {
                i += 1;
                if (displayNumbers[i - 1] + 1 !== displayNumbers[i] ||
                    displayNumbers[i] + 1 !== displayNumbers[i + 1]) {
                    if (i !== 1) {
                        if (displayNumbers[i - 2] + 2 === displayNumbers[i]) {
                            publicationXrefString += "-" + displayNumbers[i].toString();
                        }
                        else {
                            publicationXrefString += ", " + displayNumbers[i].toString();
                        }
                    }
                    else {
                        publicationXrefString += ", " + displayNumbers[i].toString();
                    }
                }
            } while (i < displayNumbers.length - 2);
        }
        i += 1;
        if (displayNumbers[i - 2] + 2 === displayNumbers[i]) {
            publicationXrefString += "-" + displayNumbers[i].toString();
        }
        else {
            publicationXrefString += ", " + displayNumbers[i].toString();
        }
    }
    return publicationXrefString;
}
var Pvjs = /** @class */ (function (_super) {
    __extends(Pvjs, _super);
    function Pvjs(props) {
        var _this = _super.call(this, props) || this;
        _this.handleEntityClick = function (entity) {
            var _a = _this.props, onEntityClick = _a.onEntityClick, _b = _a.detailPanelEnabled, detailPanelEnabled = _b === void 0 ? true : _b;
            if (onEntityClick)
                onEntityClick(entity);
            if (entity.type.indexOf("DataNode") > -1 &&
                entity.xrefIdentifier &&
                entity.xrefDataSource) {
                _this.setState({ selected: entity, detailPanelOpen: detailPanelEnabled });
            }
        };
        _this.state = {
            diagramStyle: props.diagramStyle,
            hidden: props.hidden,
            highlighted: props.highlighted,
            pvjson: props.pvjson,
            detailPanelOpen: false,
            selected: null
        };
        return _this;
    }
    Pvjs.prototype.closeActive = function () {
        this.setState({ selected: null, detailPanelOpen: false });
    };
    Pvjs.prototype.componentWillMount = function () { };
    Pvjs.prototype.shouldComponentUpdate = function (nextProps, nextState) {
        var prevProps = this.props;
        return (nextProps.wpId == prevProps.wpId &&
            nextProps.version !== prevProps.version);
    };
    Pvjs.prototype.componentWillReceiveProps = function (nextProps) {
        var prevProps = this.props;
        if (nextProps.wpId !== prevProps.wpId ||
            nextProps.version !== prevProps.version) {
            // Reset the state
            this.setState({
                pvjson: null,
                filter: null,
                detailPanelOpen: false,
                selected: null
            });
        }
    };
    Pvjs.prototype.componentWillUnmount = function () {
        // TODO cancel any pending network requests, possibly something like this:
        // this.pathwayRequest.dispose();
    };
    Pvjs.prototype.onKaavioReady = function () {
        var onReady = this.props.onReady;
        if (onReady) {
            var pvjson = this.state.pvjson;
            onReady(pvjson.entitiesById);
        }
    };
    Pvjs.prototype.handleCloseDetailsPanel = function () {
        this.setState({ detailPanelOpen: false });
    };
    Pvjs.prototype.renderDetailsPanel = function () {
        var _a = this.state, pvjson = _a.pvjson, selected = _a.selected, detailPanelOpen = _a.detailPanelOpen;
        if (!detailPanelOpen)
            return null;
        if (window.hasOwnProperty("XrefPanel")) {
            if (!!selected.xrefDataSource && !!selected.xrefIdentifier) {
                window["XrefPanel"]["show"](this.detailsPanelRef, selected.xrefIdentifier, selected.xrefDataSource, pvjson.pathway.organism, {
                    "0": selected.textContent
                });
            }
        }
        /*
        return (
          <XrefsAnnotationPanel
            key="details-panel"
            bridgeDb={new BridgeDb()}
            organism={pvjson.organism}
            entityType={!!selected && selected.wpType}
            displayName={!!selected && selected.textContent}
            dataSource={selected && selected.xrefDataSource}
            identifier={!!selected && selected.xrefIdentifier}
            handleClose={_ => this.handleCloseDetailsPanel()}
          />
        );
        //*/
    };
    Pvjs.prototype.renderKaavio = function () {
        var pvjson = this.state.pvjson;
        var _a = this.props, wpId = _a.wpId, showPanZoomControls = _a.showPanZoomControls, highlightedEntities = _a.highlightedEntities, hiddenEntities = _a.hiddenEntities, zoomedEntities = _a.zoomedEntities, pannedEntities = _a.pannedEntities, panCoordinates = _a.panCoordinates, zoomLevel = _a.zoomLevel, onPanZoomChange = _a.onPanZoomChange, panZoomLocked = _a.panZoomLocked;
        var diagramStyle = this.props.diagramStyle || "plain";
        return (React.createElement(Kaavio_1.Kaavio, { theme: __assign({ containerStyle: ContainerCustomStyle, diagramStyle: diagramStyles[diagramStyle] }, theme), pathway: pvjson.pathway, entitiesById: pvjson.entitiesById, onReady: function () {
                // Do something
            }, onEntityClick: this.handleEntityClick }));
        /*
        return (
          <Kaavio
            ref={kaavio => (this.kaavioRef = kaavio)}
            onEntityClick={this.handleEntityClick}
            entities={pvjson.entities}
            name={pvjson.name}
            width={pvjson.width}
            height={pvjson.height}
            backgroundColor={pvjson.backgroundColor}
            customStyle={customStyle}
            edgeDrawers={EdgeDrawers}
            icons={icons}
            markerDrawers={markerDrawers}
            filters={filters}
            highlightedEntities={highlightedEntities}
            hiddenEntities={hiddenEntities}
            pannedEntities={pannedEntities}
            zoomedEntities={zoomedEntities}
            panCoordinates={panCoordinates}
            zoomLevel={zoomLevel}
            onPanZoomChange={onPanZoomChange}
            panZoomLocked={panZoomLocked}
            onReady={kaavio => this.onKaavioReady()}
            showPanZoomControls={showPanZoomControls}
          />
        );
        //*/
    };
    Pvjs.prototype.render = function () {
        var _this = this;
        var state = this.state;
        return (React.createElement(Fragment, null,
            React.createElement("div", { ref: function (div) {
                    _this.detailsPanelRef = div;
                } }),
            this.renderDetailsPanel(),
            this.renderKaavio()));
    };
    return Pvjs;
}(React.Component));
exports.Pvjs = Pvjs;
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