1 | {
|
2 | "attr": {
|
3 | "clock_length": 0.001,
|
4 | "country": "french_polynesia",
|
5 | "div": 0,
|
6 | "num_date": 2011.8869660756184,
|
7 | "region": "oceania"
|
8 | },
|
9 | "children": [
|
10 | {
|
11 | "attr": {
|
12 | "clock_length": 0.0030033462298394075,
|
13 | "country": "singapore",
|
14 | "div": 0.002610631813509472,
|
15 | "num_date": 2015.0405796040964,
|
16 | "region": "southeast_asia"
|
17 | },
|
18 | "children": [
|
19 | {
|
20 | "attr": {
|
21 | "clock_length": 0.001708959991836725,
|
22 | "country": "thailand",
|
23 | "div": 0.005221788347560718,
|
24 | "num_date": 2016.8350444900752,
|
25 | "region": "southeast_asia"
|
26 | },
|
27 | "clade": 0,
|
28 | "strain": "Thailand/1610acTw"
|
29 | },
|
30 | {
|
31 | "attr": {
|
32 | "clock_length": 0.0009481910848896627,
|
33 | "country": "singapore",
|
34 | "div": 0.003448533636867537,
|
35 | "num_date": 2016.0362118103271,
|
36 | "region": "southeast_asia"
|
37 | },
|
38 | "children": [
|
39 | {
|
40 | "attr": {
|
41 | "clock_length": 0.0006356139820563357,
|
42 | "country": "singapore",
|
43 | "div": 0.004007041645876951,
|
44 | "num_date": 2016.7036276522929,
|
45 | "region": "southeast_asia"
|
46 | },
|
47 | "clade": 1,
|
48 | "strain": "SG_018"
|
49 | },
|
50 | {
|
51 | "attr": {
|
52 | "clock_length": 0.00039170240095434423,
|
53 | "country": "singapore",
|
54 | "div": 0.003634646533668043,
|
55 | "num_date": 2016.4475123718523,
|
56 | "region": "southeast_asia"
|
57 | },
|
58 | "children": [
|
59 | {
|
60 | "attr": {
|
61 | "clock_length": 0.00020219327280515459,
|
62 | "country": "singapore",
|
63 | "div": 0.003913834391451402,
|
64 | "num_date": 2016.6598220396988,
|
65 | "region": "southeast_asia"
|
66 | },
|
67 | "clade": 2,
|
68 | "strain": "SG_056"
|
69 | },
|
70 | {
|
71 | "attr": {
|
72 | "clock_length": 0.00019958587853665657,
|
73 | "country": "singapore",
|
74 | "div": 0.003913869000756373,
|
75 | "num_date": 2016.6570841889118,
|
76 | "region": "southeast_asia"
|
77 | },
|
78 | "clade": 3,
|
79 | "strain": "SG_027"
|
80 | },
|
81 | {
|
82 | "attr": {
|
83 | "clock_length": 0.00020219327280515459,
|
84 | "country": "singapore",
|
85 | "div": 0.0036346465336680464,
|
86 | "num_date": 2016.6598220396988,
|
87 | "region": "southeast_asia"
|
88 | },
|
89 | "clade": 4,
|
90 | "strain": "SG_074"
|
91 | }
|
92 | ],
|
93 | "clade": 5,
|
94 | "strain": "NODE_0000013"
|
95 | }
|
96 | ],
|
97 | "clade": 6,
|
98 | "strain": "NODE_0000012"
|
99 | }
|
100 | ],
|
101 | "clade": 7,
|
102 | "strain": "NODE_0000011"
|
103 | },
|
104 | {
|
105 | "attr": {
|
106 | "clock_length": 0.0015738603966407826,
|
107 | "country": "french_polynesia",
|
108 | "div": 0.002050093310189498,
|
109 | "num_date": 2013.5395718889172,
|
110 | "region": "oceania"
|
111 | },
|
112 | "children": [
|
113 | {
|
114 | "attr": {
|
115 | "clock_length": 0.0024605233152106705,
|
116 | "country": "american_samoa",
|
117 | "div": 0.004473557097501246,
|
118 | "num_date": 2016.123203285421,
|
119 | "region": "oceania"
|
120 | },
|
121 | "children": [
|
122 | {
|
123 | "attr": {
|
124 | "clock_length": 5.214788537212869e-06,
|
125 | "country": "american_samoa",
|
126 | "div": 0.00447355709750125,
|
127 | "num_date": 2016.1286789869953,
|
128 | "region": "oceania"
|
129 | },
|
130 | "clade": 8,
|
131 | "strain": "ZKC2/2016"
|
132 | },
|
133 | {
|
134 | "attr": {
|
135 | "clock_length": 0.0,
|
136 | "country": "american_samoa",
|
137 | "div": 0.00447355709750125,
|
138 | "num_date": 2016.123203285421,
|
139 | "region": "oceania"
|
140 | },
|
141 | "clade": 9,
|
142 | "strain": "SMGC_1"
|
143 | }
|
144 | ],
|
145 | "clade": 10,
|
146 | "strain": "NODE_0000010"
|
147 | },
|
148 | {
|
149 | "attr": {
|
150 | "clock_length": 0.00021370283873493184,
|
151 | "country": "french_polynesia",
|
152 | "div": 0.002143126864739116,
|
153 | "num_date": 2013.7639669841656,
|
154 | "region": "oceania"
|
155 | },
|
156 | "children": [
|
157 | {
|
158 | "attr": {
|
159 | "clock_length": 0.00022413437264292603,
|
160 | "country": "french_polynesia",
|
161 | "div": 0.0024222643102972813,
|
162 | "num_date": 2013.9993155373031,
|
163 | "region": "oceania"
|
164 | },
|
165 | "clade": 11,
|
166 | "strain": "1_0087_PF"
|
167 | },
|
168 | {
|
169 | "attr": {
|
170 | "clock_length": 5.5279015900037455e-05,
|
171 | "country": "french_polynesia",
|
172 | "div": 0.0022361597853983468,
|
173 | "num_date": 2013.822011791205,
|
174 | "region": "oceania"
|
175 | },
|
176 | "children": [
|
177 | {
|
178 | "attr": {
|
179 | "clock_length": 0.00016885535674288858,
|
180 | "country": "french_polynesia",
|
181 | "div": 0.00251529569631154,
|
182 | "num_date": 2013.9993155373031,
|
183 | "region": "oceania"
|
184 | },
|
185 | "clade": 12,
|
186 | "strain": "1_0181_PF"
|
187 | },
|
188 | {
|
189 | "attr": {
|
190 | "clock_length": 8.802613441771367e-05,
|
191 | "country": "french_polynesia",
|
192 | "div": 0.002422237665143729,
|
193 | "num_date": 2013.914442162902,
|
194 | "region": "oceania"
|
195 | },
|
196 | "clade": 13,
|
197 | "strain": "1_0199_PF"
|
198 | },
|
199 | {
|
200 | "attr": {
|
201 | "clock_length": 0.0007322757967590191,
|
202 | "country": "brazil",
|
203 | "div": 0.002887664510105692,
|
204 | "num_date": 2014.5909257566652,
|
205 | "region": "south_america"
|
206 | },
|
207 | "children": [
|
208 | {
|
209 | "attr": {
|
210 | "clock_length": 0.00012615099514595197,
|
211 | "country": "brazil",
|
212 | "div": 0.002980698362239428,
|
213 | "num_date": 2014.7233885013768,
|
214 | "region": "south_america"
|
215 | },
|
216 | "children": [
|
217 | {
|
218 | "attr": {
|
219 | "clock_length": 0.001215130078018482,
|
220 | "country": "puerto_rico",
|
221 | "div": 0.0050307734451243095,
|
222 | "num_date": 2015.9993155373031,
|
223 | "region": "north_america"
|
224 | },
|
225 | "clade": 14,
|
226 | "strain": "PRVABC59"
|
227 | },
|
228 | {
|
229 | "attr": {
|
230 | "clock_length": 6.467651095510771e-05,
|
231 | "country": "brazil",
|
232 | "div": 0.0030737322471371597,
|
233 | "num_date": 2014.7913009910844,
|
234 | "region": "south_america"
|
235 | },
|
236 | "children": [
|
237 | {
|
238 | "attr": {
|
239 | "clock_length": 0.0012006459067331545,
|
240 | "country": "brazil",
|
241 | "div": 0.004470636859357974,
|
242 | "num_date": 2016.0520191649555,
|
243 | "region": "south_america"
|
244 | },
|
245 | "clade": 15,
|
246 | "strain": "Brazil/2016/ZBRC16"
|
247 | },
|
248 | {
|
249 | "attr": {
|
250 | "clock_length": 0.0006294124250125154,
|
251 | "country": "guatemala",
|
252 | "div": 0.00381846683206151,
|
253 | "num_date": 2015.4522049916925,
|
254 | "region": "north_america"
|
255 | },
|
256 | "children": [
|
257 | {
|
258 | "attr": {
|
259 | "clock_length": 0.00036459748593750457,
|
260 | "country": "guatemala",
|
261 | "div": 0.004656170467000101,
|
262 | "num_date": 2015.8350444900752,
|
263 | "region": "north_america"
|
264 | },
|
265 | "clade": 16,
|
266 | "strain": "V8375"
|
267 | },
|
268 | {
|
269 | "attr": {
|
270 | "clock_length": 0.00011633744351611684,
|
271 | "country": "honduras",
|
272 | "div": 0.0038184668320615134,
|
273 | "num_date": 2015.5743631804805,
|
274 | "region": "north_america"
|
275 | },
|
276 | "children": [
|
277 | {
|
278 | "attr": {
|
279 | "clock_length": 0.0007547463790885233,
|
280 | "country": "honduras",
|
281 | "div": 0.004190637164489735,
|
282 | "num_date": 2016.3668720054757,
|
283 | "region": "north_america"
|
284 | },
|
285 | "clade": 17,
|
286 | "strain": "HND/2016/HU_ME59"
|
287 | },
|
288 | {
|
289 | "attr": {
|
290 | "clock_length": 0.0004548960382045222,
|
291 | "country": "nicaragua",
|
292 | "div": 0.0043768301798223115,
|
293 | "num_date": 2016.0520191649555,
|
294 | "region": "north_america"
|
295 | },
|
296 | "clade": 18,
|
297 | "strain": "Nica1_16"
|
298 | }
|
299 | ],
|
300 | "clade": 19,
|
301 | "strain": "NODE_0000032"
|
302 | }
|
303 | ],
|
304 | "clade": 20,
|
305 | "strain": "NODE_0000018"
|
306 | }
|
307 | ],
|
308 | "clade": 21,
|
309 | "strain": "NODE_0000017"
|
310 | }
|
311 | ],
|
312 | "clade": 22,
|
313 | "strain": "NODE_0000016"
|
314 | },
|
315 | {
|
316 | "attr": {
|
317 | "clock_length": 0.00015656905283912333,
|
318 | "country": "brazil",
|
319 | "div": 0.003073744467144721,
|
320 | "num_date": 2014.75532847463,
|
321 | "region": "south_america"
|
322 | },
|
323 | "children": [
|
324 | {
|
325 | "attr": {
|
326 | "clock_length": 0.0005797965500203119,
|
327 | "country": "brazil",
|
328 | "div": 0.0038183967369625135,
|
329 | "num_date": 2015.3641341546886,
|
330 | "region": "south_america"
|
331 | },
|
332 | "clade": 23,
|
333 | "strain": "Brazil/2015/ZBRC301"
|
334 | },
|
335 | {
|
336 | "attr": {
|
337 | "clock_length": 0.00036412102633480957,
|
338 | "country": "brazil",
|
339 | "div": 0.003166777529447065,
|
340 | "num_date": 2015.1376676745676,
|
341 | "region": "south_america"
|
342 | },
|
343 | "children": [
|
344 | {
|
345 | "attr": {
|
346 | "clock_length": 0.00021828291795400034,
|
347 | "country": "brazil",
|
348 | "div": 0.0032598099173850505,
|
349 | "num_date": 2015.3668720054757,
|
350 | "region": "south_america"
|
351 | },
|
352 | "clade": 24,
|
353 | "strain": "Brazil/2015/ZBRC303"
|
354 | },
|
355 | {
|
356 | "attr": {
|
357 | "clock_length": 0.001079374875144898,
|
358 | "country": "brazil",
|
359 | "div": 0.004190866235595548,
|
360 | "num_date": 2016.2710472279261,
|
361 | "region": "south_america"
|
362 | },
|
363 | "clade": 25,
|
364 | "strain": "BRA/2016/FC_6706"
|
365 | }
|
366 | ],
|
367 | "clade": 26,
|
368 | "strain": "NODE_0000003"
|
369 | },
|
370 | {
|
371 | "attr": {
|
372 | "clock_length": 0.0005657180692761471,
|
373 | "country": "colombia",
|
374 | "div": 0.004097952642676596,
|
375 | "num_date": 2015.3493512812076,
|
376 | "region": "south_america"
|
377 | },
|
378 | "children": [
|
379 | {
|
380 | "attr": {
|
381 | "clock_length": 0.0006352901652278181,
|
382 | "country": "colombia",
|
383 | "div": 0.00447018357590089,
|
384 | "num_date": 2016.0164271047229,
|
385 | "region": "south_america"
|
386 | },
|
387 | "clade": 27,
|
388 | "strain": "Colombia/2016/ZC204Se"
|
389 | },
|
390 | {
|
391 | "attr": {
|
392 | "clock_length": 9.885658146343169e-05,
|
393 | "country": "panama",
|
394 | "div": 0.0042840271550496556,
|
395 | "num_date": 2015.453153982869,
|
396 | "region": "south_america"
|
397 | },
|
398 | "children": [
|
399 | {
|
400 | "attr": {
|
401 | "clock_length": 0.0004862412440946062,
|
402 | "country": "panama",
|
403 | "div": 0.005214981927371812,
|
404 | "num_date": 2015.9637234770705,
|
405 | "region": "north_america"
|
406 | },
|
407 | "clade": 28,
|
408 | "strain": "PAN/CDC_259359_V1_V3/2015"
|
409 | },
|
410 | {
|
411 | "attr": {
|
412 | "clock_length": 0.0007424177309802884,
|
413 | "country": "venezuela",
|
414 | "div": 0.0054948000929859785,
|
415 | "num_date": 2016.2327173169062,
|
416 | "region": "south_america"
|
417 | },
|
418 | "clade": 29,
|
419 | "strain": "VEN/UF_1/2016"
|
420 | }
|
421 | ],
|
422 | "clade": 30,
|
423 | "strain": "NODE_0000000"
|
424 | }
|
425 | ],
|
426 | "clade": 31,
|
427 | "strain": "NODE_0000001"
|
428 | }
|
429 | ],
|
430 | "clade": 32,
|
431 | "strain": "NODE_0000004"
|
432 | },
|
433 | {
|
434 | "attr": {
|
435 | "clock_length": 0.00012526424452569563,
|
436 | "country": "brazil",
|
437 | "div": 0.0030737447743539384,
|
438 | "num_date": 2014.7224573837038,
|
439 | "region": "south_america"
|
440 | },
|
441 | "children": [
|
442 | {
|
443 | "attr": {
|
444 | "clock_length": 0.001532163383701394,
|
445 | "country": "ecuador",
|
446 | "div": 0.004750802268963389,
|
447 | "num_date": 2016.331279945243,
|
448 | "region": "south_america"
|
449 | },
|
450 | "clade": 33,
|
451 | "strain": "EcEs062_16"
|
452 | },
|
453 | {
|
454 | "attr": {
|
455 | "clock_length": 0.00020392197662656535,
|
456 | "country": "brazil",
|
457 | "div": 0.003445956387037809,
|
458 | "num_date": 2014.9365822481147,
|
459 | "region": "south_america"
|
460 | },
|
461 | "children": [
|
462 | {
|
463 | "attr": {
|
464 | "clock_length": 0.00020119523449127225,
|
465 | "country": "brazil",
|
466 | "div": 0.0037250953248542423,
|
467 | "num_date": 2015.1478439425052,
|
468 | "region": "south_america"
|
469 | },
|
470 | "clade": 34,
|
471 | "strain": "Brazil/2015/ZBRA105"
|
472 | },
|
473 | {
|
474 | "attr": {
|
475 | "clock_length": 0.0006624130084803958,
|
476 | "country": "dominican_republic",
|
477 | "div": 0.004563321981828038,
|
478 | "num_date": 2015.6321379600167,
|
479 | "region": "north_america"
|
480 | },
|
481 | "children": [
|
482 | {
|
483 | "attr": {
|
484 | "clock_length": 0.0007805537464107338,
|
485 | "country": "dominican_republic",
|
486 | "div": 0.0055876083578752225,
|
487 | "num_date": 2016.4517453798767,
|
488 | "region": "north_america"
|
489 | },
|
490 | "clade": 35,
|
491 | "strain": "DOM/2016/BB_0433"
|
492 | },
|
493 | {
|
494 | "attr": {
|
495 | "clock_length": 4.462414257609508e-05,
|
496 | "country": "dominican_republic",
|
497 | "div": 0.0046563618229369655,
|
498 | "num_date": 2015.6789947953446,
|
499 | "region": "north_america"
|
500 | },
|
501 | "children": [
|
502 | {
|
503 | "attr": {
|
504 | "clock_length": 0.0005899155247954938,
|
505 | "country": "dominican_republic",
|
506 | "div": 0.0053079944972312856,
|
507 | "num_date": 2016.2984257357973,
|
508 | "region": "north_america"
|
509 | },
|
510 | "clade": 36,
|
511 | "strain": "DOM/2016/BB_0183"
|
512 | },
|
513 | {
|
514 | "attr": {
|
515 | "clock_length": 0.0007176778439549353,
|
516 | "country": "dominican_republic",
|
517 | "div": 0.005307942375639782,
|
518 | "num_date": 2016.432580424367,
|
519 | "region": "north_america"
|
520 | },
|
521 | "clade": 37,
|
522 | "strain": "DOM/2016/MA_WGS16_011"
|
523 | },
|
524 | {
|
525 | "attr": {
|
526 | "clock_length": 7.662254552699742e-05,
|
527 | "country": "dominican_republic",
|
528 | "div": 0.004749400868482979,
|
529 | "num_date": 2015.7594510190593,
|
530 | "region": "north_america"
|
531 | },
|
532 | "children": [
|
533 | {
|
534 | "attr": {
|
535 | "clock_length": 0.0006544816140968894,
|
536 | "country": "usa",
|
537 | "div": 0.005773554692120901,
|
538 | "num_date": 2016.4466785028071,
|
539 | "region": "north_america"
|
540 | },
|
541 | "children": [
|
542 | {
|
543 | "attr": {
|
544 | "clock_length": 0.00021080959142687032,
|
545 | "country": "usa",
|
546 | "div": 0.006145793056814776,
|
547 | "num_date": 2016.6680355920603,
|
548 | "region": "north_america"
|
549 | },
|
550 | "clade": 38,
|
551 | "strain": "USA/2016/FLUR022"
|
552 | },
|
553 | {
|
554 | "attr": {
|
555 | "clock_length": 0.000234276139843787,
|
556 | "country": "usa",
|
557 | "div": 0.0060527157106952285,
|
558 | "num_date": 2016.6926762491444,
|
559 | "region": "north_america"
|
560 | },
|
561 | "clade": 39,
|
562 | "strain": "Aedes_aegypti/USA/2016/FL05"
|
563 | }
|
564 | ],
|
565 | "clade": 40,
|
566 | "strain": "NODE_0000026"
|
567 | },
|
568 | {
|
569 | "attr": {
|
570 | "clock_length": 0.00019450504760073735,
|
571 | "country": "dominican_republic",
|
572 | "div": 0.00502857975359667,
|
573 | "num_date": 2015.9636877944856,
|
574 | "region": "north_america"
|
575 | },
|
576 | "children": [
|
577 | {
|
578 | "attr": {
|
579 | "clock_length": 0.00028228441190813504,
|
580 | "country": "dominican_republic",
|
581 | "div": 0.005307750276566269,
|
582 | "num_date": 2016.2600958247776,
|
583 | "region": "north_america"
|
584 | },
|
585 | "clade": 41,
|
586 | "strain": "DOM/2016/BB_0059"
|
587 | },
|
588 | {
|
589 | "attr": {
|
590 | "clock_length": 0.00025222765275865295,
|
591 | "country": "usa",
|
592 | "div": 0.00540083543540662,
|
593 | "num_date": 2016.2285352270237,
|
594 | "region": "north_america"
|
595 | },
|
596 | "children": [
|
597 | {
|
598 | "attr": {
|
599 | "clock_length": 0.0003142627344220614,
|
600 | "country": "usa",
|
601 | "div": 0.006052424280998338,
|
602 | "num_date": 2016.558521560575,
|
603 | "region": "north_america"
|
604 | },
|
605 | "clade": 42,
|
606 | "strain": "USA/2016/FL022"
|
607 | },
|
608 | {
|
609 | "attr": {
|
610 | "clock_length": 0.0004863507561468374,
|
611 | "country": "usa",
|
612 | "div": 0.005586937649809486,
|
613 | "num_date": 2016.7392197125257,
|
614 | "region": "north_america"
|
615 | },
|
616 | "clade": 43,
|
617 | "strain": "USA/2016/FLWB042"
|
618 | }
|
619 | ],
|
620 | "clade": 44,
|
621 | "strain": "NODE_0000028"
|
622 | }
|
623 | ],
|
624 | "clade": 45,
|
625 | "strain": "NODE_0000027"
|
626 | }
|
627 | ],
|
628 | "clade": 46,
|
629 | "strain": "NODE_0000025"
|
630 | }
|
631 | ],
|
632 | "clade": 47,
|
633 | "strain": "NODE_0000023"
|
634 | }
|
635 | ],
|
636 | "clade": 48,
|
637 | "strain": "NODE_0000022"
|
638 | }
|
639 | ],
|
640 | "clade": 49,
|
641 | "strain": "NODE_0000021"
|
642 | }
|
643 | ],
|
644 | "clade": 50,
|
645 | "strain": "NODE_0000020"
|
646 | }
|
647 | ],
|
648 | "clade": 51,
|
649 | "strain": "NODE_0000005"
|
650 | }
|
651 | ],
|
652 | "clade": 52,
|
653 | "strain": "NODE_0000007"
|
654 | }
|
655 | ],
|
656 | "clade": 53,
|
657 | "strain": "NODE_0000008"
|
658 | }
|
659 | ],
|
660 | "clade": 54,
|
661 | "strain": "NODE_0000009"
|
662 | }
|
663 | ],
|
664 | "clade": 55,
|
665 | "strain": "NODE_0000031"
|
666 | } |
\ | No newline at end of file |