bridgedb/es5/BridgeDb.d.ts

/// <reference path="../typings/index.d.ts" />
import "source-map-support/register";
declare global {
    namespace NodeJS {
        interface Global {
            XMLHttpRequest: XMLHttpRequest;
        }
    }
}
import { Observable } from "rxjs/Observable";
import "rxjs/add/observable/dom/ajax";
import "rxjs/add/observable/empty";
import "rxjs/add/observable/forkJoin";
import "rxjs/add/observable/from";
import "rxjs/add/observable/throw";
import "rxjs/add/observable/zip";
import "rxjs/add/operator/buffer";
import "rxjs/add/operator/bufferWhen";
import "rxjs/add/operator/catch";
import "rxjs/add/operator/concatAll";
import "rxjs/add/operator/debounceTime";
import "rxjs/add/operator/delay";
import "rxjs/add/operator/distinctUntilChanged";
import "rxjs/add/operator/do";
import "rxjs/add/operator/filter";
import "rxjs/add/operator/find";
import "rxjs/add/operator/mergeMap";
import "rxjs/add/operator/map";
import "rxjs/add/operator/multicast";
import "rxjs/add/operator/publishReplay";
import "rxjs/add/operator/race";
import "rxjs/add/operator/reduce";
import "rxjs/add/operator/skip";
import "rxjs/add/operator/toArray";
import "rx-extra/add/operator/throughNodeStream";
export declare const CONFIG_DEFAULT: {
    baseIri: string;
    context: string;
    dataSourcesMetadataHeadersIri: string;
    dataSourcesMetadataIri: string;
    http: {
        timeout: number;
        retryLimit: number;
        retryDelay: number;
    };
};
export interface DataSourcesMetadataHeaderRow {
    header: string;
    description: string;
    example_entry: string;
    id: string;
    name: string;
    "http://www.w3.org/1999/02/22-rdf-syntax-ns#datatype": string;
}
export declare class BridgeDb {
    config: any;
    dataSourceMappings$: any;
    getTSV: any;
    private xrefsRequestQueue;
    private xrefsResponseQueue;
    constructor(config?: Partial<typeof CONFIG_DEFAULT>);
    attributes(organism: organism, xrefDataSource: string, xrefIdentifier: string): any;
    attributeSearch(organism: organism, query: string, attrName?: string): Observable<Xref>;
    attributeSet(organism: organism): Observable<string[]>;
    convertXrefDataSourceTo: Function;
    identifyHeaderNameForXrefDataSource: (input: string) => Observable<string>;
    dataSourceProperties: (input: string) => Observable<DataSource>;
    isFreeSearchSupported(organism: organism): Observable<boolean>;
    isMappingSupported(organism: organism, sourceXrefDataSource: string, targetXrefDataSource: string): Observable<boolean>;
    organismProperties(organism: organism): Observable<{}>;
    organisms(): Observable<{}>;
    private parseXrefRow;
    search(organism: organism, query: string): Observable<Xref>;
    sourceDataSources(organism: organism): Observable<DataSource>;
    targetDataSources(organism: organism): Observable<DataSource>;
    xrefExists(organism: organism, xrefDataSource: string, xrefIdentifier: string): Observable<boolean>;
    xrefs(organism: organism, xrefDataSource: string, xrefIdentifier: string, desiredXrefDataSourceOrSources?: string): Observable<Xref>;
    xrefsBatch: (organism: organism, oneOrMoreXrefDataSources: string | string[], xrefIdentifiers: string[], desiredXrefDataSourceOrSources?: string | string[]) => Observable<{
        organism: string;
        inputXrefIdentifier: string;
        inputXrefDataSource: string;
        xrefs: Xref[];
    }>;
}