UNPKG

37.1 kBJSONView Raw
1{"pathway":{"@context":["https://cdn.rawgit.com/wikipathways/WpVocabularies/7a46a05/contexts/pvjs.jsonld"],"backgroundColor":"white","borderWidth":0,"color":"black","contains":["idb3e022e0","id206ac4ab","ida3507e27","id471f45d8","idb12262c","id1e219796","id15a83c9f","id14ee7ceb","idf1083275","id1f159e35","idd5d26da","d120d","bc11b","a45cf","ddf5c","e8e55","b9fc8","ac174","c0317","b77de","f0fdd","aa588","d9dea","f7d12","d0763","c8ee2","b62ef","eb4a5","c9038","aa664","ea2e7","d039a","de6d5"],"drawAs":"rect","gpmlElementName":"Pathway","height":965.4425607010502,"kaavioType":"Group","name":"Geranylgeranyldiphosphate biosynthesis II (plastidic)","padding":5,"type":["Pathway","http://identifiers.org/pw/PW:0000251"],"width":1021.5571635209417,"x":0,"y":0,"zIndex":0,"fontSize":12,"fontWeight":"bold","textAlign":"left","verticalAlign":"top","comments":[{"source":"WikiPathways-category","content":"Metabolic Process"},{"source":"WikiPathways-description","content":"In plants the geranyl-geranyl diphosphate (GGPP) as a precursor molecule that feeds in the biosynthesis of essential compounds such as chlorophylls, carotenoids, plastoquinones, growth hormone gibberellin and other secondary metabolites. Occurs in plastids."}],"dataSourceVersion":"20110915","organism":"Oryza sativa","lastModified":"10/17/2013","standardName":"Geranylgeranyldiphosphate biosynthesis II","displayName":"plastidic","textContent":"Name: Geranylgeranyldiphosphate biosynthesis II (plastidic)\nLast Modified: 10/17/2013\nOrganism: Oryza sativa","isSimilarTo":"http://wikipathways.org/index.php/Special:SearchPathways?query=Geranylgeranyldiphosphate%20biosynthesis%20II%20(plastidic)&species=Oryza%20sativa&doSearch=1","id":"hash://sha256/08a2d06b4e956a9d2620fcfbca5a3a645412e6da5befdde4cca7630d7b53e333"},"entityMap":{"d120d":{"textContent":"Delta3-isopentenyl-PP","id":"d120d","wpType":"Metabolite","x":427,"y":62.106485857829966,"width":149,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"KEGG Compound","dbId":"C00129","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"bc11b":{"textContent":"Geranyl-PP","id":"bc11b","wpType":"Metabolite","x":461.7375865285658,"y":386.2077846481381,"width":80,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"KEGG Compound","dbId":"C00341","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"a45cf":{"textContent":"EC:2.5.1.1 (Geranyl-diphosphate synthase)","id":"a45cf","wpType":"GeneProduct","x":541.4576247118068,"y":223.943661971831,"width":251.3067378915166,"height":19.996739289128186,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Enzyme Nomenclature","dbId":"2.5.1.1","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"ddf5c":{"textContent":"trans, trans-farnesyl diphosphate","id":"ddf5c","wpType":"Metabolite","x":409,"y":670.9924047776798,"width":184.73758652856577,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"CAS","dbId":"13058-04-3","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"e8e55":{"textContent":"EC:2.5.1.10 (Farnesyl pyrophosphate synthetase)","id":"e8e55","wpType":"GeneProduct","x":543.5501653803749,"y":527.9753596385829,"width":268.0233551252387,"height":20.21787917688985,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Enzyme Nomenclature","dbId":"2.5.1.10","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"b9fc8":{"textContent":"Geranylgeranyl diphosphate","id":"b9fc8","wpType":"Metabolite","x":417.73758652856577,"y":915.4425607010502,"width":168,"height":20,"zIndex":32768,"fontSize":10,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"ChEBI","dbId":"15831","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"ac174":{"textContent":"EC:2.5.1.29 (Geranylgeranyl pyrophosphate synthase)","id":"ac174","wpType":"GeneProduct","x":533.6273428886439,"y":809.1639580023904,"width":298.76702330853914,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Enzyme Nomenclature","dbId":"2.5.1.29","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"c0317":{"textContent":"Diphosphate","id":"c0317","wpType":"Metabolite","x":357.0224445695248,"y":592.1125863451811,"width":80,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"CAS","dbId":"2466-09-3","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"b77de":{"textContent":"Dimethylallyl-PP","id":"b77de","wpType":"Metabolite","x":349.29577464788736,"y":173.6999205695009,"width":95.77464788732395,"height":30.525431543175145,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"CAS","dbId":"358-71-4","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"f0fdd":{"textContent":"Methylerythritol phosphate pathway","id":"f0fdd","wpType":"Pathway","x":31.028924047413113,"y":241.53808599636506,"width":260.52037172723476,"height":28.884449214902588,"zIndex":32768,"fontWeight":"bold","fontSize":14,"verticalAlign":"middle","drawAs":"none","color":"#14961e","textAlign":"center","backgroundColor":"transparent","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","borderWidth":0,"lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"WikiPathways","dbId":"WP2212","type":["DataNode","SingleFreeNode","Pathway"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"bf01c":{"textContent":"LOC_Os12g17320","id":"bf01c","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8,"y":61.1713244228425,"width":142.89710289710294,"height":19.999999999999986,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os12g17320","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"d9dea"},"aceee":{"textContent":"LOC_Os08g09370","id":"aceee","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8.000000000000114,"y":32.86026731470264,"width":142.89710289710294,"height":19.999999999999986,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os08g09370","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"d9dea"},"e4cf8":{"textContent":"LOC_Os06g46450","id":"e4cf8","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8,"y":8,"width":142.89710289710294,"height":19.999999999999986,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os06g46450","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"d9dea"},"e8b8e":{"textContent":"LOC_Os05g50550","id":"e8b8e","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8,"y":87.63547995139811,"width":142.89710289710294,"height":19.999999999999986,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os05g50550","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"d9dea"},"bb3cb":{"textContent":"LOC_Os09g33930","id":"bb3cb","wpType":"GeneProduct","comments":[{"content":"farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed//farnesyltranstransferase"}],"x":8.00000000001262,"y":88.19190569206,"width":126.0440713536198,"height":19.999999999999943,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os09g33930","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"aa588"},"f11ad":{"textContent":"LOC_Os01g53600","id":"f11ad","wpType":"GeneProduct","comments":[{"content":"farnesyltransferase subunit beta, putative, expressed//farnesyltranstransferase//protein farnesyltransferase"}],"x":8.000000000012392,"y":67.99999999999989,"width":126.0440713536198,"height":19.999999999999943,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os01g53600","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"aa588"},"de7e8":{"textContent":"LOC_Os07g39270","id":"de7e8","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase"}],"x":8.00000000001262,"y":48.000000000000114,"width":126.0440713536198,"height":19.999999999999943,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os07g39270","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"aa588"},"fcdd2":{"textContent":"LOC_Os02g44780","id":"fcdd2","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase"}],"x":8,"y":28.00000000000159,"width":126.04407135361987,"height":20,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os02g44780","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"aa588"},"f8ee9":{"textContent":"LOC_OS01G14630","id":"f8ee9","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed//diterpene phytoalexin metabolic process"}],"x":8.000000000012392,"y":8,"width":126.0440713536198,"height":19.999999999999943,"zIndex":32768,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_OS01G14630","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"aa588"},"f7d12":{"textContent":"Delta3-isopentenyl-PP","id":"f7d12","wpType":"Metabolite","x":317,"y":446.5178500441604,"width":130.87494490285985,"height":19.999999999999986,"zIndex":32769,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"KEGG Compound","dbId":"C00129","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"b62ef":{"textContent":"Diphosphate","id":"b62ef","wpType":"Metabolite","x":344.22345061821323,"y":875.2934231910757,"width":80,"height":20,"zIndex":32772,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"CAS","dbId":"2466-09-3","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"eb4a5":{"textContent":"Delta3-isopentenyl-PP","id":"eb4a5","wpType":"Metabolite","x":308,"y":743.1492197710415,"width":125.42721334053476,"height":20,"zIndex":32773,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"KEGG Compound","dbId":"C00129","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"aa664":{"textContent":"Diphosphate","id":"aa664","wpType":"Metabolite","x":365.92068295247265,"y":299.4529790664672,"width":80.00000000000003,"height":19.999999999999986,"zIndex":32775,"fontSize":12,"verticalAlign":"middle","color":"#0000ff","textAlign":"center","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"CAS","dbId":"2466-09-3","type":["DataNode","SingleFreeNode","Metabolite"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode"},"baeec":{"textContent":"LOC_Os04g56230","id":"baeec","wpType":"GeneProduct","comments":[{"content":"TRAF-type zinc finger family protein"}],"x":8.000000000000114,"y":78.8403361344541,"width":142.8971028971029,"height":19.999999999999943,"zIndex":32783,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os04g56230","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"ea2e7"},"dcd6a":{"textContent":"LOC_Os01g50760 (FPPS)","id":"dcd6a","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"citations":["publicationXrefd01"],"x":8.000000000000114,"y":8,"width":142.8971028971029,"height":20.000000000000004,"zIndex":32784,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os01g50760","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"ea2e7"},"ce9a2":{"textContent":"LOC_Os04g56210","id":"ce9a2","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8.000000000000114,"y":55.310924369734835,"width":142.8971028971029,"height":19.999999999999943,"zIndex":32786,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os04g56210","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"ea2e7"},"a0a07":{"textContent":"LOC_Os01g50050","id":"a0a07","wpType":"GeneProduct","comments":[{"content":"polyprenyl synthetase, putative, expressed"}],"x":8,"y":32.747899159647886,"width":142.8971028971029,"height":19.999999999999943,"zIndex":32789,"fontSize":12,"verticalAlign":"middle","textAlign":"center","color":"#000000","backgroundColor":"#ffffff","textDecoration":"none","fontFamily":"Arial","fontStyle":"normal","fontWeight":"normal","borderWidth":1,"drawAs":"rect","lineHeight":1.1,"overflow":"hidden","textOverflow":"clip","whiteSpace":"pre","padding":8,"dbConventionalName":"Gramene Rice","dbId":"LOC_Os01g50050","type":["DataNode","SingleFreeNode","GeneProduct"],"kaavioType":"SingleFreeNode","gpmlElementName":"DataNode","isPartOf":"ea2e7"},"publicationXreff44":{"id":"publicationXreff44","dbId":"1536568","dbConventionalName":"PubMed","standardName":"Biosynthesis of rice phytoalexins: identification of putative diterpene hydrocarbon precursors.","source":"Arch Biochem Biophys","year":1992,"authors":["Wickham KA","West CA"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"1"},"publicationXrefd01":{"id":"publicationXrefd01","dbId":"9061016","dbConventionalName":"PubMed","standardName":"Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants.","source":"Biochim Biophys Acta","year":1997,"authors":["Sanmiya K","Iwasaki T","Matsuoka M","Miyao M","Yamamoto N"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"2"},"publicationXrefd3e":{"id":"publicationXrefd3e","dbId":"10353221","dbConventionalName":"PubMed","standardName":"Localization of farnesyl diphosphate synthase in chloroplasts.","source":"Plant Cell Physiol","year":1999,"authors":["Sanmiya K","Ueno O","Matsuoka M","Yamamoto N"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"3"},"publicationXrefbdb":{"id":"publicationXrefbdb","dbId":"11522913","dbConventionalName":"PubMed","standardName":"Partial characterization of farnesyl and geranylgeranyl diphosphatases induced in rice seedlings by UV-C irradiation.","source":"Plant Cell Physiol","year":2001,"authors":["Nah J","Song SJ","Back K"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"4"},"publicationXrefacd":{"id":"publicationXrefacd","dbId":"16501255","dbConventionalName":"PubMed","standardName":"Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa.","source":"Plant Cell Physiol","year":2006,"authors":["Ohara K","Yamamoto K","Hamamoto M","Sasaki K","Yazaki K"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"5"},"publicationXrefa22":{"id":"publicationXrefa22","dbId":"17872948","dbConventionalName":"PubMed","standardName":"Identification of a biosynthetic gene cluster in rice for momilactones.","source":"J Biol Chem","year":2007,"authors":["Shimura K","Okada A","Okada K","Jikumaru Y","Ko KW","Toyomasu T","Sassa T","Hasegawa M","Kodama O","Shibuya N","Koga J","Nojiri H","Yamane H"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"6"},"publicationXrefb1a":{"id":"publicationXrefb1a","dbId":"18256497","dbConventionalName":"PubMed","standardName":"Comparison of the enzymatic properties of ent-copalyl diphosphate synthases in the biosynthesis of phytoalexins and gibberellins in rice.","source":"Biosci Biotechnol Biochem","year":2008,"authors":["Hayashi Y","Toyomasu T","Hirose Y","Onodera Y","Mitsuhashi W","Yamane H","Sassa T","Dairi T"],"type":["PublicationXref"],"gpmlElementName":"PublicationXref","textContent":"7"},"http://identifiers.org/cl/CL:0000610":{"term":"plant cell","dbId":"CL:0000610","ontology":"Cell Type","type":["openControlledVocabulary"],"gpmlElementName":"openControlledVocabulary","id":"http://identifiers.org/cl/CL:0000610"},"http://identifiers.org/pw/PW:0000251":{"term":"diterpenoid biosynthetic pathway","dbId":"PW:0000251","ontology":"Pathway Ontology","type":["openControlledVocabulary"],"gpmlElementName":"openControlledVocabulary","id":"http://identifiers.org/pw/PW:0000251"},"idb3e022e0":{"id":"idb3e022e0","zIndex":12288,"borderWidth":1,"points":[{"x":501.73758652856577,"y":406.2077846481381,"isAttachedTo":"bc11b","attachmentDisplay":{"position":[0.5,1],"offset":[0,0]},"orientation":[0,1]},{"x":501.3687932642829,"y":670.9924047776798,"isAttachedTo":"ddf5c","attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"orientation":[0,1]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["bc11b","ddf5c"],"burrs":["b91da"]},"b91da":{"attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"drawAs":"none","id":"b91da","isAttachedTo":"idb3e022e0","borderWidth":0,"height":0,"width":0,"zIndex":12288,"type":["Anchor","Burr"],"kaavioType":"Burr","gpmlElementName":"Anchor"},"id206ac4ab":{"id":"id206ac4ab","zIndex":12288,"borderWidth":1,"points":[{"x":543.5501653803749,"y":538.0842992270277,"isAttachedTo":"e8e55","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":501.5531898964243,"y":538.6000947129089,"isAttachedTo":"b91da","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"MimCatalysis","isAttachedTo":["e8e55","idb3e022e0"]},"ida3507e27":{"id":"ida3507e27","zIndex":12288,"borderWidth":1,"points":[{"x":501.3687932642829,"y":690.9924047776798,"isAttachedTo":"ddf5c","attachmentDisplay":{"position":[0.5,1],"offset":[0,0]},"orientation":[0,1]},{"x":501.73758652856577,"y":915.4425607010502,"isAttachedTo":"b9fc8","attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"orientation":[0,1]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["ddf5c","b9fc8"],"burrs":["ce68b"]},"ce68b":{"attachmentDisplay":{"position":[0.5672174806337065,0],"offset":[0,0]},"drawAs":"none","id":"ce68b","isAttachedTo":"ida3507e27","borderWidth":0,"height":0,"width":0,"zIndex":12288,"type":["Anchor","Burr"],"kaavioType":"Burr","gpmlElementName":"Anchor"},"id471f45d8":{"id":"id471f45d8","zIndex":12288,"borderWidth":1,"points":[{"x":533.6273428886439,"y":819.1639580023904,"isAttachedTo":"ac174","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":501.5779792505241,"y":818.3044567483765,"isAttachedTo":"ce68b","attachmentDisplay":{"position":[0.5672174806337065,0],"offset":[],"relativeOffset":[0,0]},"orientation":[]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"MimCatalysis","isAttachedTo":["ac174","ida3507e27"]},"idb12262c":{"id":"idb12262c","drawAs":"CurvedLine","zIndex":12288,"borderWidth":1,"points":[{"x":447.87494490285985,"y":456.5178500441604,"isAttachedTo":"f7d12","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[1,0]},{"x":502.81690140845075,"y":497.5589723785347},{"x":501.5531898964243,"y":538.6000947129089,"isAttachedTo":"b91da","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["f7d12","idb3e022e0"]},"id1e219796":{"id":"id1e219796","drawAs":"CurvedLine","zIndex":12288,"borderWidth":1,"points":[{"x":501.5531898964243,"y":538.6000947129089,"isAttachedTo":"b91da","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[-1,0]},{"x":502.81690140845075,"y":570.3563405290449},{"x":437.0224445695248,"y":602.1125863451811,"isAttachedTo":"c0317","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["idb3e022e0","c0317"]},"id14ee7ceb":{"id":"id14ee7ceb","drawAs":"CurvedLine","zIndex":12288,"borderWidth":1,"points":[{"x":445.07042253521126,"y":181.33127845529467,"isAttachedTo":"b77de","attachmentDisplay":{"position":[1,0.25],"offset":[0,0]},"orientation":[1,0]},{"x":498.59154929577466,"y":207.74420685413935},{"x":501.6187932642829,"y":234.15713525298403,"isAttachedTo":"f34f8","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["b77de","d039a"]},"id15a83c9f":{"id":"id15a83c9f","drawAs":"CurvedLine","zIndex":12288,"borderWidth":1,"points":[{"x":427,"y":72.10648585782997,"isAttachedTo":"d120d","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":161.2891099110305,"y":241.53808599636506,"isAttachedTo":"f0fdd","attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"orientation":[0,1]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["d120d","f0fdd"]},"idd5d26da":{"id":"idd5d26da","zIndex":12288,"borderWidth":1,"points":[{"x":834.5274289335271,"y":232.23573727903857,"isAttachedTo":"d9dea","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":792.7643626033234,"y":233.9420316163951,"isAttachedTo":"a45cf","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","isAttachedTo":["d9dea","a45cf"]},"id1f159e35":{"id":"id1f159e35","zIndex":12288,"borderWidth":1,"points":[{"x":840.6600606238385,"y":538.1726991016237,"isAttachedTo":"ea2e7","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":811.5735205056135,"y":538.0842992270277,"isAttachedTo":"e8e55","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","isAttachedTo":["ea2e7","e8e55"]},"idf1083275":{"id":"idf1083275","zIndex":12288,"borderWidth":1,"points":[{"x":848.667179042809,"y":819.5290180584846,"isAttachedTo":"aa588","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":832.394366197183,"y":819.1639580023904,"isAttachedTo":"ac174","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","isAttachedTo":["aa588","ac174"]},"d0763":{"id":"d0763","drawAs":"CurvedLine","zIndex":32770,"borderWidth":1,"points":[{"x":433.42721334053476,"y":753.1492197710415,"isAttachedTo":"eb4a5","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[1,0]},{"x":500,"y":785.726838259709},{"x":501.5779792505241,"y":818.3044567483765,"isAttachedTo":"ce68b","attachmentDisplay":{"position":[0.5672174806337065,0],"offset":[],"relativeOffset":[0,0]},"orientation":[1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["eb4a5","ida3507e27"]},"c8ee2":{"id":"c8ee2","drawAs":"CurvedLine","zIndex":32771,"borderWidth":1,"points":[{"x":501.5779792505241,"y":818.3044567483765,"isAttachedTo":"ce68b","attachmentDisplay":{"position":[0.5672174806337065,0],"offset":[],"relativeOffset":[0,0]},"orientation":[-1,0]},{"x":501.4084507042254,"y":851.7989399697261},{"x":424.22345061821323,"y":885.2934231910757,"isAttachedTo":"b62ef","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["ida3507e27","b62ef"]},"c9038":{"id":"c9038","drawAs":"CurvedLine","zIndex":32774,"borderWidth":1,"points":[{"x":501.6187932642829,"y":234.15713525298403,"isAttachedTo":"f34f8","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[-1,0]},{"x":502.81690140845075,"y":271.8050571597256},{"x":445.9206829524727,"y":309.4529790664672,"isAttachedTo":"aa664","attachmentDisplay":{"position":[1,0.5],"offset":[0,0]},"orientation":[-1,0]}],"color":"#000000","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["d039a","aa664"]},"d039a":{"id":"d039a","zIndex":32787,"borderWidth":1,"points":[{"x":501.5,"y":82.10648585782997,"isAttachedTo":"d120d","attachmentDisplay":{"position":[0.5,1],"offset":[0,0]},"orientation":[0,1]},{"x":501.73758652856577,"y":386.2077846481381,"isAttachedTo":"bc11b","attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"orientation":[0,1]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge","SBO:0000167","SBO:0000393","SBO:0000394","DirectedInteraction"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"Arrow","isAttachedTo":["d120d","bc11b"],"burrs":["f34f8"]},"f34f8":{"attachmentDisplay":{"position":[0.5,0],"offset":[0,0]},"drawAs":"none","id":"f34f8","isAttachedTo":"d039a","borderWidth":0,"height":0,"width":0,"zIndex":12288,"type":["Anchor","Burr"],"kaavioType":"Burr","gpmlElementName":"Anchor"},"de6d5":{"id":"de6d5","zIndex":32788,"borderWidth":1,"points":[{"x":541.4576247118068,"y":233.9420316163951,"isAttachedTo":"a45cf","attachmentDisplay":{"position":[0,0.5],"offset":[0,0]},"orientation":[-1,0]},{"x":501.6187932642829,"y":234.15713525298403,"isAttachedTo":"f34f8","attachmentDisplay":{"position":[0.5,0],"offset":[],"relativeOffset":[0,0]},"orientation":[]}],"color":"#000000","drawAs":"StraightLine","backgroundColor":"none","type":["Interaction","Edge"],"kaavioType":"Edge","gpmlElementName":"Interaction","markerEnd":"MimCatalysis","isAttachedTo":["a45cf","d039a"]},"aa588":{"id":"aa588","textAlign":"center","color":"#808080","verticalAlign":"middle","fontSize":1,"fontWeight":"bold","borderWidth":0,"fillOpacity":0.1,"padding":8,"drawAs":"none","strokeDasharray":"5,3","backgroundColor":"transparent","type":["Group","GroupGroup"],"contains":["bb3cb","f11ad","de7e8","fcdd2","f8ee9"],"kaavioType":"Group","gpmlElementName":"Group","zIndex":32768,"x":848.667179042809,"y":761.4330652124546,"width":142.04407135363238,"height":116.19190569206},"ea2e7":{"id":"ea2e7","textAlign":"center","color":"#808080","verticalAlign":"middle","fontSize":1,"fontWeight":"bold","borderWidth":0,"fillOpacity":0.1,"padding":8,"drawAs":"none","strokeDasharray":"5,3","backgroundColor":"transparent","type":["Group","GroupGroup"],"contains":["baeec","dcd6a","ce9a2","a0a07"],"kaavioType":"Group","gpmlElementName":"Group","zIndex":32783,"x":840.6600606238386,"y":484.7525310343967,"width":158.89710289710308,"height":106.84033613445399},"d9dea":{"id":"d9dea","textAlign":"center","color":"#808080","verticalAlign":"middle","fontSize":1,"fontWeight":"bold","borderWidth":0,"fillOpacity":0.1,"padding":8,"drawAs":"none","strokeDasharray":"5,3","backgroundColor":"transparent","type":["Group","GroupGroup"],"contains":["bf01c","aceee","e4cf8","e8b8e"],"kaavioType":"Group","gpmlElementName":"Group","zIndex":32768,"x":834.5274289335272,"y":174.41799730333952,"width":158.89710289710308,"height":115.63547995139811}}}