1 |
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2 | import "source-map-support/register";
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3 | import { PvjsonEntity, GPMLElement, Pathway, PathwayStarter, PvjsonEntitiesById } from "./gpml2pvjson";
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4 | import { GraphIdManager } from "./GraphIdManager";
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5 | export declare type GPML_VALUE_SIMPLE = string | number;
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6 | export declare type GPML_VALUE_UP_TO_OBJECT = GPML_VALUE_SIMPLE | Record<string, GPML_VALUE_SIMPLE>;
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7 | export declare type GPML_VALUE_UP_TO_SUB_OBJECT = GPML_VALUE_UP_TO_OBJECT | Record<string, GPML_VALUE_UP_TO_OBJECT>;
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8 | export declare type GPML_VALUE = GPML_VALUE_UP_TO_SUB_OBJECT | GPML_VALUE_UP_TO_SUB_OBJECT[];
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9 | export declare class Processor {
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10 | output: {
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11 | pathway: Pathway | PathwayStarter;
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12 | entitiesById: PvjsonEntitiesById;
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13 | };
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14 | graphIdManager: GraphIdManager;
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15 | graphIdsByGraphRef: Record<string, string[]>;
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16 | containedGraphIdsByGroupGraphId: Record<string, string[]>;
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17 | containedGraphIdsByGroupGroupId: Record<string, string[]>;
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18 | promisedGraphIdByGroupId: Record<string, Promise<string>>;
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19 | groupIdToGraphIdStream: Highland.Stream<[string, string]>;
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20 | promisedGPMLElementByGraphId: Record<string, Promise<GPMLElement>>;
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21 | gpmlElementStream: Highland.Stream<GPMLElement>;
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22 | promisedPvjsonEntityLatestByGraphId: Record<string, Promise<PvjsonEntity>>;
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23 | pvjsonEntityLatestStream: Highland.Stream<PvjsonEntity>;
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24 | graphIdToZIndex: Record<string, number>;
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25 | KeyMappings: Record<string, any>;
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26 | KeyValueConverters: Record<string, any>;
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27 | ValueMappings: Record<string, any>;
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28 | ValueConverters: Record<string, any>;
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29 | constructor(KeyMappings: any, KeyValueConverters: any, ValueMappings: any, ValueConverters: any);
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30 | private ensureGraphIdExists;
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31 | fillInGPMLPropertiesFromParent: import("lodash").CurriedFunction2<Record<string, any>, Record<string, any>, Record<string, any>>;
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32 | getPvjsonEntityLatestByGraphId: (graphId: any) => Promise<PvjsonEntity>;
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33 | getGPMLElementByGraphId: (GraphId: any) => Promise<Record<string, any>>;
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34 | preprocessGPMLElement: (gpmlElement: GPMLElement) => GPMLElement;
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35 | processGPMLAndPropertiesAndType: import("lodash").CurriedFunction2<string, any, ({
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36 | fill: string;
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37 | stroke: string;
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38 | drawAs: string;
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39 | gpmlElementName: string;
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40 | id: string;
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41 | kaavioType: string;
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42 | strokeWidth: number;
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43 | height: number;
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44 | padding: number;
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45 | width: number;
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46 | x: number;
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47 | y: number;
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48 | zIndex: number;
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49 | contains: string[];
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50 | type: string[];
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51 | } & {
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52 | strokeStyle?: string;
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53 | cellularComponent?: string;
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54 | xrefIdentifier?: string;
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55 | xrefDataSource?: string;
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56 | strokeDasharray?: string;
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57 | textContent?: string;
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58 | burrs?: string[];
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59 | citations?: string[];
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60 | filters?: string[];
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61 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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62 | } & Comment) | ({
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63 | fill: string;
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64 | stroke: string;
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65 | drawAs: string;
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66 | gpmlElementName: string;
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67 | id: string;
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68 | kaavioType: string;
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69 | strokeWidth: number;
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70 | height: number;
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71 | padding: number;
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72 | width: number;
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73 | x: number;
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74 | y: number;
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75 | zIndex: number;
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76 | type: string[];
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77 | } & {
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78 | strokeStyle?: string;
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79 | cellularComponent?: string;
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80 | xrefIdentifier?: string;
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81 | xrefDataSource?: string;
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82 | fontWeight?: string;
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83 | isPartOf?: string;
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84 | strokeDasharray?: string;
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85 | textAlign?: string;
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86 | verticalAlign?: string;
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87 | wpType?: string;
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88 | rx?: number;
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89 | ry?: number;
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90 | rotation?: number;
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91 | textRotation?: number;
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92 | burrs?: string[];
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93 | citations?: string[];
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94 | filters?: string[];
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95 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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96 | } & Comment) | ({
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97 | fill: string;
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98 | stroke: string;
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99 | drawAs: string;
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100 | gpmlElementName: string;
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101 | id: string;
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102 | kaavioType: string;
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103 | strokeWidth: number;
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104 | height: number;
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105 | padding: number;
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106 | width: number;
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107 | x: number;
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108 | y: number;
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109 | zIndex: number;
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110 | type: string[];
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111 | attachmentDisplay: import("gpml2pvjson/src/gpml2pvjson").AttachmentDisplay;
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112 | } & {
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113 | xrefIdentifier?: string;
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114 | xrefDataSource?: string;
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115 | strokeDasharray?: string;
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116 | rotation?: number;
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117 | textRotation?: number;
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118 | citations?: string[];
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119 | filters?: string[];
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120 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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121 | } & {
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122 | isAttachedTo: string;
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123 | } & Comment) | ({
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124 | stroke: string;
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125 | drawAs: string;
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126 | gpmlElementName: string;
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127 | id: string;
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128 | kaavioType: string;
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129 | zIndex: number;
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130 | type: string[];
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131 | } & {
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132 | left?: string;
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133 | right?: string;
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134 | controlled?: string;
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135 | biopaxType?: string;
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136 | controller?: string;
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137 | controlType?: string;
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138 | conversionDirection?: string;
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139 | xrefIdentifier?: string;
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140 | xrefDataSource?: string;
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141 | isPartOf?: string;
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142 | markerEnd?: string;
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143 | markerStart?: string;
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144 | strokeDasharray?: string;
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145 | wpInteractionType?: string;
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146 | burrs?: string[];
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147 | citations?: string[];
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148 | filters?: string[];
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149 | sboInteractionType?: string[];
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150 | participants?: string[];
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151 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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152 | } & {
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153 | isAttachedTo?: string[];
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154 | points: import("gpml2pvjson/src/gpml2pvjson").Point[];
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155 | } & Comment) | ({
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156 | source: string;
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157 | year: string;
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158 | gpmlElementName: string;
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159 | id: string;
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160 | kaavioType: string;
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161 | standardName: string;
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162 | textContent: string;
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163 | authors: string[];
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164 | type: string[];
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165 | } & {
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166 | xrefIdentifier?: string;
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167 | xrefDataSource?: string;
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168 | } & Comment)>;
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169 | processProperties: import("lodash").CurriedFunction1<Record<string, any>, ({
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170 | fill: string;
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171 | stroke: string;
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172 | drawAs: string;
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173 | gpmlElementName: string;
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174 | id: string;
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175 | kaavioType: string;
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176 | strokeWidth: number;
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177 | height: number;
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178 | padding: number;
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179 | width: number;
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180 | x: number;
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181 | y: number;
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182 | zIndex: number;
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183 | contains: string[];
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184 | type: string[];
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185 | } & {
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186 | strokeStyle?: string;
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187 | cellularComponent?: string;
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188 | xrefIdentifier?: string;
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189 | xrefDataSource?: string;
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190 | strokeDasharray?: string;
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191 | textContent?: string;
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192 | burrs?: string[];
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193 | citations?: string[];
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194 | filters?: string[];
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195 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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196 | } & Comment) | ({
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197 | fill: string;
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198 | stroke: string;
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199 | drawAs: string;
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200 | gpmlElementName: string;
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201 | id: string;
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202 | kaavioType: string;
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203 | strokeWidth: number;
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204 | height: number;
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205 | padding: number;
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206 | width: number;
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207 | x: number;
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208 | y: number;
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209 | zIndex: number;
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210 | type: string[];
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211 | } & {
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212 | strokeStyle?: string;
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213 | cellularComponent?: string;
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214 | xrefIdentifier?: string;
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215 | xrefDataSource?: string;
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216 | fontWeight?: string;
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217 | isPartOf?: string;
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218 | strokeDasharray?: string;
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219 | textAlign?: string;
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220 | verticalAlign?: string;
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221 | wpType?: string;
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222 | rx?: number;
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223 | ry?: number;
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224 | rotation?: number;
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225 | textRotation?: number;
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226 | burrs?: string[];
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227 | citations?: string[];
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228 | filters?: string[];
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229 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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230 | } & Comment) | ({
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231 | fill: string;
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232 | stroke: string;
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233 | drawAs: string;
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234 | gpmlElementName: string;
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235 | id: string;
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236 | kaavioType: string;
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237 | strokeWidth: number;
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238 | height: number;
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239 | padding: number;
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240 | width: number;
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241 | x: number;
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242 | y: number;
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243 | zIndex: number;
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244 | type: string[];
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245 | attachmentDisplay: import("gpml2pvjson/src/gpml2pvjson").AttachmentDisplay;
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246 | } & {
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247 | xrefIdentifier?: string;
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248 | xrefDataSource?: string;
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249 | strokeDasharray?: string;
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250 | rotation?: number;
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251 | textRotation?: number;
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252 | citations?: string[];
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253 | filters?: string[];
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254 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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255 | } & {
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256 | isAttachedTo: string;
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257 | } & Comment) | ({
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258 | stroke: string;
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259 | drawAs: string;
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260 | gpmlElementName: string;
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261 | id: string;
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262 | kaavioType: string;
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263 | zIndex: number;
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264 | type: string[];
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265 | } & {
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266 | left?: string;
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267 | right?: string;
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268 | controlled?: string;
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269 | biopaxType?: string;
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270 | controller?: string;
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271 | controlType?: string;
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272 | conversionDirection?: string;
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273 | xrefIdentifier?: string;
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274 | xrefDataSource?: string;
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275 | isPartOf?: string;
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276 | markerEnd?: string;
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277 | markerStart?: string;
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278 | strokeDasharray?: string;
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279 | wpInteractionType?: string;
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280 | burrs?: string[];
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281 | citations?: string[];
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282 | filters?: string[];
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283 | sboInteractionType?: string[];
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284 | participants?: string[];
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285 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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286 | } & {
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287 | isAttachedTo?: string[];
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288 | points: import("gpml2pvjson/src/gpml2pvjson").Point[];
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289 | } & Comment) | ({
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290 | source: string;
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291 | year: string;
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292 | gpmlElementName: string;
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293 | id: string;
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294 | kaavioType: string;
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295 | standardName: string;
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296 | textContent: string;
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297 | authors: string[];
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298 | type: string[];
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299 | } & {
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300 | xrefIdentifier?: string;
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301 | xrefDataSource?: string;
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302 | } & Comment)>;
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303 | processPropertiesAndType: import("lodash").CurriedFunction2<string, Record<string, any>, ({
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304 | fill: string;
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305 | stroke: string;
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306 | drawAs: string;
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307 | gpmlElementName: string;
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308 | id: string;
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309 | kaavioType: string;
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310 | strokeWidth: number;
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311 | height: number;
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312 | padding: number;
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313 | width: number;
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314 | x: number;
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315 | y: number;
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316 | zIndex: number;
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317 | contains: string[];
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318 | type: string[];
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319 | } & {
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320 | strokeStyle?: string;
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321 | cellularComponent?: string;
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322 | xrefIdentifier?: string;
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323 | xrefDataSource?: string;
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324 | strokeDasharray?: string;
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325 | textContent?: string;
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326 | burrs?: string[];
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327 | citations?: string[];
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328 | filters?: string[];
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329 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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330 | } & Comment) | ({
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331 | fill: string;
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332 | stroke: string;
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333 | drawAs: string;
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334 | gpmlElementName: string;
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335 | id: string;
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336 | kaavioType: string;
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337 | strokeWidth: number;
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338 | height: number;
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339 | padding: number;
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340 | width: number;
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341 | x: number;
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342 | y: number;
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343 | zIndex: number;
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344 | type: string[];
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345 | } & {
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346 | strokeStyle?: string;
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347 | cellularComponent?: string;
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348 | xrefIdentifier?: string;
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349 | xrefDataSource?: string;
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350 | fontWeight?: string;
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351 | isPartOf?: string;
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352 | strokeDasharray?: string;
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353 | textAlign?: string;
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354 | verticalAlign?: string;
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355 | wpType?: string;
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356 | rx?: number;
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357 | ry?: number;
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358 | rotation?: number;
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359 | textRotation?: number;
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360 | burrs?: string[];
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361 | citations?: string[];
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362 | filters?: string[];
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363 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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364 | } & Comment) | ({
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365 | fill: string;
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366 | stroke: string;
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367 | drawAs: string;
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368 | gpmlElementName: string;
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369 | id: string;
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370 | kaavioType: string;
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371 | strokeWidth: number;
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372 | height: number;
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373 | padding: number;
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374 | width: number;
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375 | x: number;
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376 | y: number;
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377 | zIndex: number;
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378 | type: string[];
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379 | attachmentDisplay: import("gpml2pvjson/src/gpml2pvjson").AttachmentDisplay;
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380 | } & {
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381 | xrefIdentifier?: string;
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382 | xrefDataSource?: string;
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383 | strokeDasharray?: string;
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384 | rotation?: number;
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385 | textRotation?: number;
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386 | citations?: string[];
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387 | filters?: string[];
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388 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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389 | } & {
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390 | isAttachedTo: string;
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391 | } & Comment) | ({
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392 | stroke: string;
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393 | drawAs: string;
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394 | gpmlElementName: string;
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395 | id: string;
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396 | kaavioType: string;
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397 | zIndex: number;
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398 | type: string[];
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399 | } & {
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400 | left?: string;
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401 | right?: string;
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402 | controlled?: string;
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403 | biopaxType?: string;
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404 | controller?: string;
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405 | controlType?: string;
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406 | conversionDirection?: string;
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407 | xrefIdentifier?: string;
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408 | xrefDataSource?: string;
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409 | isPartOf?: string;
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410 | markerEnd?: string;
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411 | markerStart?: string;
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412 | strokeDasharray?: string;
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413 | wpInteractionType?: string;
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414 | burrs?: string[];
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415 | citations?: string[];
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416 | filters?: string[];
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417 | sboInteractionType?: string[];
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418 | participants?: string[];
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419 | comments?: import("gpml2pvjson/src/gpml2pvjson").Comment[];
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420 | } & {
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421 | isAttachedTo?: string[];
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422 | points: import("gpml2pvjson/src/gpml2pvjson").Point[];
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423 | } & Comment) | ({
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424 | source: string;
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425 | year: string;
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426 | gpmlElementName: string;
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427 | id: string;
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428 | kaavioType: string;
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429 | standardName: string;
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430 | textContent: string;
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431 | authors: string[];
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432 | type: string[];
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433 | } & {
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434 | xrefIdentifier?: string;
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435 | xrefDataSource?: string;
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436 | } & Comment)>;
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437 | private processType;
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438 | setPvjsonEntity: (pvjsonEntity: any) => void;
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439 | getGPMLKeyAsJSFunctionName: (gpmlKey: string) => string;
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440 | getPvjsonValue: (gpmlElement: any, gpmlKey: string, gpmlValue: GPML_VALUE) => any;
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441 | processKV: import("lodash").CurriedFunction2<any, [any, any], [string, any][]>;
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442 | }
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