{"_type":"export","__export_format":4,"__export_date":"2022-09-01T13:17:17.414Z","__export_source":"insomnia.desktop.app:v2022.5.0","resources":[{"_id":"req_c3720683d7fe43ed84201e1730404caf","parentId":"fld_abb388625a7f471b8d75119eae9fba7d","modified":1661204800970,"created":1648673695675,"url":"http://localhost:3000/flowapi/tool","name":"libraries","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NTcwNTUxODR9.2UbZk4pnp-EOHmi-B3SURSNbdMlVAYxJyfVZWNRAMxs","disabled":true},"metaSortKey":-1651082938548.5,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"fld_abb388625a7f471b8d75119eae9fba7d","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1653490228569,"created":1653490228569,"name":"library","description":"","environment":{},"environmentPropertyOrder":null,"metaSortKey":-1653490228569,"_type":"request_group"},{"_id":"wrk_7869c75ca78b4ebe908831704ff3400c","parentId":null,"modified":1648673695654,"created":1648673695654,"name":"New Document","description":"","scope":"design","_type":"workspace"},{"_id":"req_a197e8a13edf46358a28fb0bce821d0f","parentId":"fld_abb388625a7f471b8d75119eae9fba7d","modified":1661970602519,"created":1648675648628,"url":"http://localhost:3000/flowapi/tool","name":"library","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n  \"general\": {\n    \"name\": \"Phylolib\",\n    \"description\": \"PhyloLib is a library.\"\n  },\n  \"access\": {\n    \"_type\": \"library\",\n    \"library\": {\n      \"address\": \"localhost\",      \n      \"dockerUrl\": \"unix://var/run/docker.sock\",\n      \"dockerImage\": \"luanab/phylolib\",\n      \"dockerContainer\": \"phylolib\",\n\t\t\t\"dockerAutoRemove\": true,        \n\t\t\t\"dockerNetworkMode\": \"bridge\",\n\t\t\t\"dockerApiVersion\": \"auto\",\n      \"dockerVolumes\": [{\n\t\t\t\t\"source\": \"/opt/.phylolibVol\",\n\t\t\t\t\"target\": \"/phylolib\",\n\t\t\t\t\"_type\": \"bind\"\n\t\t\t}]\n    }\n  },\n  \"library\": [\n    {\n      \"name\": \"Arguments\",\n      \"order\": 0,\n      \"invocation\": \"-args\",\n      \"allowCommandRep\": false,\n      \"commands\": [\n        {\n          \"name\": \"help\",\n          \"invocation\": [\"help\"]\n        },\n        {\n          \"name\": \"distance\",\n          \"invocation\": [\"distance\"],\n          \"allowedValues\": [\"hamming\", \"grapetree\", \"kimura\"],\n          \"allowedCommandSets\": [\"Options\"]\n        },\n        {\n          \"name\": \"correction\",\n          \"invocation\": [\"correction\"],\n          \"allowedValues\": [\"jukescantor\"],\n          \"allowedCommandSets\": [\"Options\"]\n        },\n        {\n          \"name\": \"algorithm\",\n          \"invocation\": [\"algorithm\"],\n          \"allowedValues\": [\n            \"goeburst\",\n            \"edmonds\",\n            \"sl\",\n            \"cl\",\n            \"upgma\",\n            \"upgmc\",\n            \"wpgma\",\n            \"wpgmc\",\n            \"saitounei\",\n            \"studierkepler\",\n            \"unj\"\n          ],\n          \"allowedCommandSets\": [\"Options\"]\n        },\n        {\n          \"name\": \"optimization\",\n          \"invocation\": [\"optimization\"],\n          \"allowedValues\": [\"lbr\"],\n          \"allowedCommandSets\": [\"Options\"]\n        }\n      ]\n    },\n    {\n      \"name\": \"Options\",\n      \"order\": 1,\n      \"allowCommandRep\": true,\n      \"commands\": [\n        {\n          \"name\": \"File Output\",\n          \"description\":\n            \"Output file as <format>:<location> with format being (asymmetric|symmetric|newick|nexus)\",\n          \"invocation\": [\"-o\", \"--out\"],\n          \"allowedValues\": [\"file\"]\n        },\n        {\n          \"name\": \"Dataset Input\",\n          \"description\":\n            \"Input dataset file as <format>:<location> with format being (fasta|ml|snp)\",\n          \"invocation\": [\"-d\", \"--dataset\"],\n          \"allowedValues\": [\"file\"]\n        },\n        {\n          \"name\": \"Distance Matrix Input\",\n          \"description\":\n            \"Input distance matrix file as <format>:<location> with format being (asymmetric|symmetric)\",\n          \"invocation\": [\"-m\", \"--matrix\"],\n          \"allowedValues\": [\"file\"]\n        },\n        {\n          \"name\": \"Phylogenetic Tree Input\",\n          \"description\":\n            \"Input phylogenetic tree file as <format>:<location> with format being (newick|nexus)\",\n          \"invocation\": [\"-m\", \"--matrix\"],\n          \"allowedValues\": [\"file\"]\n        },\n        {\n          \"name\": \"Limit of focus variants\",\n          \"description\":\n            \"Limit of locus variants to consider using goeBURST algorithm [default: 3]\",\n          \"invocation\": [\"-l\", \"--lvs\"],\n          \"allowedValues\": [\"file\"]\n        }\n      ]\n    }\n  ]\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_f944293b6d8842b6a5f5bf036c3e1b99"}],"authentication":{},"metaSortKey":-1651082938598.5,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_83bbf7ed648c4cb39800109178b1a43f","parentId":"fld_abb388625a7f471b8d75119eae9fba7d","modified":1661894395172,"created":1648679985265,"url":"http://localhost:3000/flowapi/tool/Phylolib","name":"library","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{},"metaSortKey":-1651082938498.5,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_98b51e53975145ae8c8b898f91dd12bc","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661969540983,"created":1656350798910,"url":"http://localhost:3000/flowapi/workflow","name":"workflow (trimmomatic)","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\t\t\"name\": \"trimmomatic_spades_abricate\",\n\t  \"description\": \"A test workflow\",\n\t\t\"start_date\": \"datetime.today()\",\n\t\t\"end_date\": \"datetime.today()\",\n\t\t\"tasks\": [\n\t\t\t{\t\t\t\n\t\t\t\"id\": \"trimmomatic\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"image\": \"trimmomatic:latest\",\n\t\t\t\t\"api_version\": \"auto\",\n        \"mounts\": [\n\t\t\t\t\t{\n\t\t\t\t\t\t\"source\": \"/opt/.fastqTest\",\n\t\t\t\t\t\t\"target\": \"/fastq\",\n\t\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t\t}\n\t\t\t\t], \n        \"command\": \"this is my command\",\n\t\t\t\t\"auto_remove\": true,\n        \"docker_url\": \"unix://var/run/docker.sock\",\n\t\t\t\t\"network_mode\": \"bridge\"\n\t\t\t},\n\t\t\t\"parents\": [],\n\t\t\t\"children\": [\"id2\", \"id3\"]\n\t\t},\n\t\t{\t\t\t\n\t\t\t\"id\": \"id2\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"image\": \"step.action.image\",\n\t\t\t\t\"api_version\": \"test\",\n        \"mounts\": [{\n\t\t\t\t\t\"source\": \"/opt/.fastqTest\",\n\t\t\t\t\t\"target\": \"/fastq\",\n\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t}],\n        \"command\": \"step.action.command\",\n\t\t\t\t\"auto_remove\": \"test\",\n        \"docker_url\": \"step.action.docker_url\",\n\t\t\t\t\"network_mode\": \"test\"\n\t\t\t},\t\n\t\t\t\"parents\": [\"id1\"],\n\t\t\t\"children\": [\"id4\"]\n\t\t},\n\t\t{\t\t\t\t\n\t\t\t\"id\": \"id3\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"image\": \"step.action.image\",\n\t\t\t\t\"api_version\": \"test\",\n        \"mounts\": [{\n\t\t\t\t\t\"source\": \"/opt/.fastqTest\",\n\t\t\t\t\t\"target\": \"/fastq\",\n\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t}],\n        \"command\": \"step.action.command\",\n\t\t\t\t\"auto_remove\": \"test\",\n        \"docker_url\": \"step.action.docker_url\",\n\t\t\t\t\"network_mode\": \"test\"\n\t\t\t},\t\t\n\t\t\t\"parents\": [\"id1\"],\n\t\t\t\"children\": [\"id4\"]\n\t\t},\n\t\t{\t\t\n\t\t\t\"id\": \"id4\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"image\": \"step.action.image\",\n\t\t\t\t\"api_version\": \"test\",\n        \"mounts\": [{\n\t\t\t\t\t\"source\": \"/opt/.fastqTest\",\n\t\t\t\t\t\"target\": \"/fastq\",\n\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t}],\n        \"command\": \"step.action.command\",\n\t\t\t\t\"auto_remove\": \"test\",\n        \"docker_url\": \"step.action.docker_url\",\n\t\t\t\t\"network_mode\": \"test\"\n\t\t\t},\t\t\n\t\t\t\"parents\": [\"id2\", \"id3\"],\n\t\t\t\"children\": []\n\t\t}\n\t]\n}"},"parameters":[],"headers":[{"id":"pair_7e86cf5959df4e218a30458a78942c76","name":"Content-type","value":"application/json","description":""}],"authentication":{"type":"bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjA1OTYyNDl9.zt_ouiwNFlCdXCFDDf7e6xnZkGHVoh25Ee3blSYxJ70","prefix":"Bearer"},"metaSortKey":-1656350798910,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"fld_810438eca69448eca08fd023959d2f25","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1653490247987,"created":1653490247987,"name":"workflow","description":"","environment":{},"environmentPropertyOrder":null,"metaSortKey":-1653490247987,"_type":"request_group"},{"_id":"req_342a1f84cb014466b23abf5717c13141","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661712517141,"created":1659803913271,"url":"http://localhost:3000/flowapi/workflow","name":"workflows","description":"","method":"GET","body":{},"parameters":[],"headers":[{"id":"pair_60a46b1dcc1943f19d3d1069a08f4629","name":"Content-type","value":"application/json","description":""}],"authentication":{"type":"bearer","prefix":"Bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE3MTE0ODR9.VKe-ewfQXN5CxlmjADDcxwP6tlC--_G3HMkI75NyRog"},"metaSortKey":-1659803913271,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_d888c3374f0340c8aa74544f627c6fb5","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661723716027,"created":1660932592194,"url":"http://localhost:3000/flowapi/workflow/phylolib_workflow","name":"workflow","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE0NTAzMDJ9.odjz7b0j44fqV8fC0x1XJR3w8G4Q7r5l5h5UTwPGxVI","prefix":"Bearer"},"metaSortKey":-1660932592194,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_bcc1f4a0a66d4ba69ae2976c1901bdfc","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661721912581,"created":1661533939645,"url":"http://localhost:3000/flowapi/workflow/phylolib_workflow","name":"workflow run","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE1MzQwMDB9.U_C3WmpH8pTY-fmWInpAmn9UBIIAugMf-IYGLDnpo3E","prefix":"Bearer"},"metaSortKey":-1661533939645,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_fadf865d742a4d23b27787495b870f62","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661533958431,"created":1661533951429,"url":"","name":"workflow run task detail","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{},"metaSortKey":-1661533951429,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_81dadd3b28eb4b248444f0055bd4209d","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661722526490,"created":1661533961821,"url":"http://localhost:3000/flowapi/workflow/phylolib_workflow/manual__2022-08-28T18:35:32.701942+00:00/tasks/hamming/logs/1","name":"workflow run task detail log","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"bearer","prefix":"Bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE3MTE0ODR9.VKe-ewfQXN5CxlmjADDcxwP6tlC--_G3HMkI75NyRog"},"metaSortKey":-1661533961821,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_d4d43f351268422fb757821c9ec00a26","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1661970600369,"created":1661701981187,"url":"http://localhost:3000/flowapi/workflow","name":"workflow (phylolib)","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\t\t\"name\": \"phylolib_workflow2\",\n\t  \"description\": \"Uses the phylolib docker container\",\n\t\t\"start_date\": \"datetime.today()\",\n\t\t\"end_date\": \"datetime.today()\",\n\t\t\"tasks\": [\n\t\t\t{\t\t\t\n\t\t\t\"id\": \"hamming\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"dockerImage\": \"luanab/phylolib\",\n\t\t\t\t\"dockerApiVersion\": \"auto\",\n        \"dockerVolumes\": [\n\t\t\t\t\t{\n\t\t\t\t\t\t\"source\": \"/opt/.phylolibVol\",\n\t\t\t\t\t\t\"target\": \"/phylolib\",\n\t\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t\t}\n\t\t\t\t], \n        \"command\": \"distance hamming --dataset=ml:/phylolib/data/datasets/10.txt --out=symmetric:/phylolib/out.txt\",\n\t\t\t\t\"dockerAutoRemove\": true,\n        \"dockerUrl\": \"unix://var/run/docker.sock\",\n\t\t\t\t\"dockerNetworkMode\": \"bridge\"\n\t\t\t},\n\t\t\t\"parents\": [],\n\t\t\t\"children\": [\"upgma\"]\n\t\t},\n\t\t{\t\t\t\n\t\t\t\"id\": \"upgma\",\n\t\t\t\"type\": \"container\",\n\t\t\t\"action\": {\n\t\t\t\t\"dockerImage\": \"luanab/phylolib\",\n\t\t\t\t\"dockerApiVersion\": \"auto\",\n        \"dockerVolumes\": [\n\t\t\t\t\t{\n\t\t\t\t\t\t\"source\": \"/opt/.phylolibVol\",\n\t\t\t\t\t\t\"target\": \"/phylolib\",\n\t\t\t\t\t\t\"_type\": \"bind\"\n\t\t\t\t\t}\n\t\t\t\t], \n        \"command\": \"algorithm upgma --out=newick:/phylolib/tree.txt --matrix=symmetric:/phylolib/out.txt\",\n\t\t\t\t\"dockerAutoRemove\": true,\n        \"dockerUrl\": \"unix://var/run/docker.sock\",\n\t\t\t\t\"dockerNetworkMode\": \"bridge\"\n\t\t\t},\t\n\t\t\t\"parents\": [\"hamming\"],\n\t\t\t\"children\": []\n\t\t}\n\t]\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_f8e842d283bc4d0fbd630393cca05217"}],"authentication":{"type":"bearer","prefix":"Bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE3ODI0OTl9.Fs3oy62vtKfaV2ONdVDENFKa39Mfyy2BfZSaEBjTTH4"},"metaSortKey":-1656350798860,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_f126158522124e22875e6551d7ed4eaf","parentId":"fld_810438eca69448eca08fd023959d2f25","modified":1662031200816,"created":1661959231760,"url":"http://localhost:3000/flowapi/workflow","name":"workflow (phylolib) v2","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\t\t\"name\": \"phylolib_workflow2\",\n\t  \"description\": \"Uses the phylolib docker container\",\n\t\t\"start_date\": \"datetime.today()\",\t\t\n\t\t\"tasks\": [\n\t\t\t{\t\t\t\n\t\t\t\"id\": \"hamming\",\n\t\t\t\"tool\": \"Phylolib\",\n\t\t\t\"action\": {\n        \"command\": \"distance hamming --dataset=ml:/phylolib/data/datasets/10.txt --out=symmetric:/phylolib/out.txt\"\n\t\t\t},\t\t\t\n\t\t\t\"children\": [\"upgma\"]\n\t\t},\n\t\t{\t\t\t\n\t\t\t\"id\": \"upgma\",\n\t\t\t\"tool\": \"Phylolib\",\n\t\t\t\"action\": {\t\t\t\t\n        \"command\": \"algorithm upgma --out=newick:/phylolib/tree.txt --matrix=symmetric:/phylolib/out.txt\"\t\n\t\t\t},\t\t\t\t\n\t\t\t\"children\": []\n\t\t}\n\t]\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_86d86326a75d45f1ab00874d3218f4e4"}],"authentication":{"type":"bearer","token":"eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpZCI6InRlc3QiLCJpYXQiOjE2NjE5NjA2NzR9.wB7yxC5cQxMdvYThiHsLR0f3Qt28gjZdhtAbXKYXClY","prefix":"Bearer"},"metaSortKey":-1656350798810,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_27689c9376eb47ca93b8341771448cb4","parentId":"fld_69f81815f7194321b22e2dea46b57b66","modified":1662031202633,"created":1657021899631,"url":"http://localhost:3000/flowapi/register","name":"register","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\t\"username\": \"test\",\n\t\"password\": \"test1234567\"\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_54de294b06ab4bfb88e7b50b765a6569"}],"authentication":{},"metaSortKey":-1657021899631,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"fld_69f81815f7194321b22e2dea46b57b66","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1657021895702,"created":1657021895702,"name":"auth","description":"","environment":{},"environmentPropertyOrder":null,"metaSortKey":-1657021895702,"_type":"request_group"},{"_id":"req_a4f94bdf54ba4a9db825aec2d0eb1325","parentId":"fld_69f81815f7194321b22e2dea46b57b66","modified":1661960673113,"created":1657021927264,"url":"http://localhost:3000/flowapi/login","name":"login","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\t\"username\": \"test\",\n\t\"password\": \"test1234567\"\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_89bda082ea9140f5bce353555456bdd6"}],"authentication":{},"metaSortKey":-1657021927264,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_b7a9bd97eded4597b6dee3e9a62bbe20","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1656504430307,"created":1653490318428,"url":"http://localhost:8080/api/v1/dags","name":"DAGs","description":"","method":"GET","body":{},"parameters":[],"headers":[{"id":"pair_be1ddd2fbb2d489b866608c5375d04f4","name":"Content-type","value":"application/json","description":""},{"id":"pair_2b825deaa89a4cd8ad460c6990abf54a","name":"Accept","value":"application/json","description":""}],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1653490318428,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","parentId":null,"modified":1653490309649,"created":1653490309649,"name":"Apache Airflow","description":"","scope":"collection","_type":"workspace"},{"_id":"req_7433b4699c274b45aae3baea2e262c96","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1660933125003,"created":1656504114083,"url":"http://localhost:8080/api/v1/dags/dag_generator2/dagRuns","name":"DAG runs","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1656504114084,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_b12961989f1148cfa868af2e39fa95ac","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1661013114294,"created":1656514849477,"url":"http://localhost:8080/api/v1/dags/dag_generator/dagRuns","name":"DAG run","description":"","method":"POST","body":{"mimeType":"application/json","text":"{  \n\t\"conf\": {\n\t\t\"dagId\": \"test_dag\",\n\t\t\"tasks\": [\n\t\t\t{\n\t\t\t\t\"id\": \"id1\",\n\t\t\t\t\"operator_import\": \"airflow.providers.docker.operators.docker\",\n\t\t\t\t\"operator_type\": \"DockerOperator\",\n\t\t\t\t\"operator_params\": {\n\t\t\t\t\t\"image\":\"trimmomatic:latest\",\n\t\t\t\t\t\"api_version\":\"auto\",\n\t\t\t\t\t\"mounts\": [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\"target\":\"/fastq\",\n\t\t\t\t\t\t\"source\":\"/opt/.fastqTest\",\n\t\t\t\t\t\t\"type\":\"bind\"\t\n\t\t\t\t\t\t}\n\t\t\t\t\t],\n\t\t\t\t\t\"command\": \"java -jar /NGStools/Trimmomatic-0.39/trimmomatic.jar PE -phred33 /fastq/sample1_1.fastq /fastq/sample1_2.fastq /fastq/sample1_R1_trimmed.fastq /fastq/sample1_R1_untrimmed.fastq /fastq/sample1_R2_trimmed.fastq /fastq/sample1_R2_untrimmed.fastq ILLUMINACLIP:/NGStools/Trimmomatic-0.39/adapters/TruSeq3-SE.fa:2:30:10\",\n\t\t\t\t\t\"auto_remove\": true,\n\t\t\t\t\t\"docker_url\": \"unix://var/run/docker.sock\",\n\t\t\t\t\t\"network_mode\": \"bridge\"\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"id\": \"id2\",\n\t\t\t\t\"operator_import\": \"airflow.providers.docker.operators.docker\",\n\t\t\t\t\"operator_type\": \"DockerOperator\",\n\t\t\t\t\"operator_params\": {\n\t\t\t\t\t\"image\":\"spades:latest\",\n\t\t\t\t\t\"api_version\":\"auto\",\n\t\t\t\t\t\"mounts\": [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\"target\":\"/fastq\",\n\t\t\t\t\t\t\"source\":\"/opt/.fastqTest\",\n\t\t\t\t\t\t\"type\":\"bind\"\t\n\t\t\t\t\t\t}\n\t\t\t\t\t],\n\t\t\t\t\t\"command\":\"/NGStools/SPAdes-3.14.0-Linux/bin/spades.py -k 21,33,55,77 --careful --only-assembler --pe1-1 /fastq/sample1_R1_trimmed.fastq --pe1-2 /fastq/sample1_R2_trimmed.fastq -o /fastq/fq_spades.fasta\",\n\t\t\t\t\t\"auto_remove\": true,\n\t\t\t\t\t\"docker_url\": \"unix://var/run/docker.sock\",\n\t\t\t\t\t\"network_mode\": \"bridge\"\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t\"id\": \"id3\",\n\t\t\t\t\"operator_import\": \"airflow.providers.docker.operators.docker\",\n\t\t\t\t\"operator_type\": \"DockerOperator\",\n\t\t\t\t\"operator_params\": {\n\t\t\t\t\t\"task_id\":\"abricate\",\n\t\t\t\t\t\"image\":\"abricate:latest\",\n\t\t\t\t\t\"api_version\":\"auto\",\n\t\t\t\t\t\"mounts\": [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\"target\":\"/fastq\",\n\t\t\t\t\t\t\"source\":\"/opt/.fastqTest\",\n\t\t\t\t\t\t\"type\":\"bind\"\t\n\t\t\t\t\t\t}\n\t\t\t\t\t],\n\t\t\t\t\t\"command\":\"abricate /fastq/fq_spades.fasta/contigs.fasta --db card --csv\",\n\t\t\t\t\t\"auto_remove\": true,\n\t\t\t\t\t\"docker_url\": \"unix://var/run/docker.sock\",\n\t\t\t\t\t\"network_mode\": \"bridge\"\n\t\t\t\t}\n\t\t\t}\n\t\t],\n\t\t\"execution_order\": \"id1 >> id2 >> id3\"\n\t}\t\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_c920d041bb024cc2bc3d1cf0bd231c6b"}],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1656514849477,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_db857c78b7da407f90280ce2ef23be52","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1661013115129,"created":1656685072598,"url":"http://localhost:8080/api/v1/variables","name":"Variable","description":"","method":"POST","body":{"mimeType":"application/json","text":"{\n\n    \"key\": \"string\",\n    \"value\": \"string\"\n\n}"},"parameters":[],"headers":[{"name":"Content-Type","value":"application/json","id":"pair_6951f751e1384fc4b343b4c079e593f4"}],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1656685072599,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_c790fcf6e94941e3800f2166b8e15757","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1660951375545,"created":1660935402068,"url":"http://localhost:8080/api/v1/dagSources/Ii9vcHQvYWlyZmxvdy9kYWdzL2RnNGRzNGdkZmdkNTU0NWcucHki.UC7E6RUnnOxCiT5eqKv8Vxaud0c","name":"DAG source code","description":"","method":"GET","body":{},"parameters":[],"headers":[{"id":"pair_563a493c9b1b47e18c1f6674bfbf6184","name":"Content-type","value":"plain/text","description":""}],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1660935402068,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"req_cb6d1236caa0412cb427435a6e5d71b0","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1661722560017,"created":1661007045371,"url":"http://localhost:8080/api/v1/dags/phylolib_workflow/dagRuns/manual__2022-08-28T18:35:32.701942+00:00/taskInstances/hamming/logs/{% hash 'sha1', 'hex', '' %}","name":"DAG","description":"","method":"GET","body":{},"parameters":[],"headers":[],"authentication":{"type":"basic","useISO88591":false,"disabled":false,"username":"airflow","password":"airflow"},"metaSortKey":-1661007045371,"isPrivate":false,"settingStoreCookies":true,"settingSendCookies":true,"settingDisableRenderRequestBody":false,"settingEncodeUrl":true,"settingRebuildPath":true,"settingFollowRedirects":"global","_type":"request"},{"_id":"env_2e5fa9b84faeb50c2fd8fafc29a37bdd43a7e847","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1648673695669,"created":1648673695669,"name":"Base Environment","data":{},"dataPropertyOrder":null,"color":null,"isPrivate":false,"metaSortKey":1648673695669,"_type":"environment"},{"_id":"jar_2e5fa9b84faeb50c2fd8fafc29a37bdd43a7e847","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1648673695673,"created":1648673695673,"name":"Default Jar","cookies":[],"_type":"cookie_jar"},{"_id":"spc_16f9246c2f014fe19dc5651a3bfaba55","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1651448022114,"created":1648673695664,"fileName":"FLOWViZ","contents":"","contentType":"yaml","_type":"api_spec"},{"_id":"uts_79ef671f90824f3fa8f56fc335b9b043","parentId":"wrk_7869c75ca78b4ebe908831704ff3400c","modified":1648673695677,"created":1648673695677,"name":"Example Test Suite","_type":"unit_test_suite"},{"_id":"env_39f5fa48ec32d071208c91c988165fe53b8613aa","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1653490309657,"created":1653490309657,"name":"Base Environment","data":{},"dataPropertyOrder":null,"color":null,"isPrivate":false,"metaSortKey":1653490309657,"_type":"environment"},{"_id":"jar_39f5fa48ec32d071208c91c988165fe53b8613aa","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1661722555831,"created":1653490309658,"name":"Default Jar","cookies":[{"key":"session","value":".eJwNyzEOgCAMAMC_dHaAipDyGVKxxEREAzgZ_y7rJfdCSFXaDj5xbjJBuKWeXKR08L0-Q2KrKfTrkAIeZjaIm9UrG7dGg2pxyianUByRtjQjsyFaYIJ8Rc4yzojfD_mgH9o.Ywvfuw.AR-jaJ5HRLTIFlZwWAxfTRi-Q9A","expires":"2022-09-27T21:35:55.000Z","domain":"localhost","path":"/","httpOnly":true,"extensions":["SameSite=Lax"],"hostOnly":true,"creation":"2022-05-25T15:23:06.069Z","lastAccessed":"2022-08-28T21:35:55.831Z","id":"6749811394936229"}],"_type":"cookie_jar"},{"_id":"spc_73bbe515244947eba91d311953aafc69","parentId":"wrk_6d7b8bd614c8487f91d0c9b661977c2b","modified":1653490309651,"created":1653490309651,"fileName":"Apache Airflow","contents":"","contentType":"yaml","_type":"api_spec"}]}