import { Store } from 'n3'; import { QueryEngine } from '@comunica/query-sparql'; interface AuthCredentials { username: string; password: string; } declare class RDFGraph { protected store: Store; protected quiet: boolean; protected endpoint?: string; protected engine: QueryEngine; protected remote: boolean; protected auth?: AuthCredentials; constructor(store?: Store, quiet?: boolean, endpoint?: string, auth?: AuthCredentials); /** * Set authentication credentials for SPARQL endpoint * @param auth Authentication credentials containing username and password */ setAuth(auth: AuthCredentials): void; /** * Clear authentication credentials */ clearAuth(): void; /** * Execute a SPARQL query * @param queryStr SPARQL query string * @returns Array containing results and raw dataframe */ protected query(queryStr: string): Promise<[any[], any]>; /** * Execute a SPARQL ASK query * @param queryStr SPARQL ASK query string * @returns Boolean result of the ASK query */ askQuery(queryStr: string): Promise; /** * Execute a SPARQL Update query * @param queryStr SPARQL Update query string * @returns Boolean result of the Update query */ updateQuery(queryStr: string): Promise; /** * Get the source configuration for queries * @returns Array containing the store configuration * @private */ private getConfiguration; getStore(): Store; /** * Get id(s) from the graph and returns a new RDFGraph object * @param ids Graph id(s) to get * @returns RDFGraph object with the retrieved graph(s) */ get(ids: string | string[]): RDFGraph; /** * Removes id(s) from the graph * @param ids Graph id(s) to be removed */ remove(ids: string | string[]): void; /** * Pops graph(s) from the combined graph and returns the popped RDF Graph * @param ids Graph id(s) to be popped * @returns RDFGraph object with the popped graph(s) */ pop(ids: string | string[]): RDFGraph; /** * Sets a SPARQL endpoint for a remote Knowledge Base (example: GraphDB) * @param endpoint URL for the SPARQL endpoint * * @example * ```typescript * // Fetch LiPD data from remote RDF Graph * const rdf = new RDFGraph(); * rdf.setEndpoint("https://linkedearth.graphdb.mint.isi.edu/repositories/LiPDVerse-dynamic"); * rdf.setRemote(true); * const [result, resultDf] = await rdf.query("SELECT ?s ?p ?o WHERE {?s ?p ?o} LIMIT 10"); * ``` */ setEndpoint(endpoint: string): void; getEndpoint(): string | undefined; setRemote(remote: boolean): void; getRemote(): boolean; } declare class LiPDSeries extends RDFGraph { private lipds; constructor(graph?: Store); /** * Load LiPD data into the series * @param lipd LiPD object to load */ load(lipd: LiPD): void; } declare class ArchiveType { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: ArchiveType): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): ArchiveType | null; } declare class ArchiveTypeConstants { static Borehole: ArchiveType; static Coral: ArchiveType; static FluvialSediment: ArchiveType; static GlacierIce: ArchiveType; static GroundIce: ArchiveType; static LakeSediment: ArchiveType; static MarineSediment: ArchiveType; static Midden: ArchiveType; static MolluskShell: ArchiveType; static Peat: ArchiveType; static Sclerosponge: ArchiveType; static Shoreline: ArchiveType; static Speleothem: ArchiveType; static TerrestrialSediment: ArchiveType; static Wood: ArchiveType; static Documents: ArchiveType; static Other: ArchiveType; } declare class Change { name: string | null; notes: string[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Change; static fromData(id: string, data: Record): Change; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Change; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getName(): string | null; setName(name: string): void; getNotes(): string[]; setNotes(notes: string[]): void; addNotes(notes: string): void; } declare class ChangeLog { changes: Change[]; curator: string | null; lastVersion: string | null; notes: string | null; timestamp: string | null; version: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): ChangeLog; static fromData(id: string, data: Record): ChangeLog; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): ChangeLog; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getChanges(): Change[]; setChanges(changes: Change[]): void; addChanges(changes: Change): void; getCurator(): string | null; setCurator(curator: string): void; getLastVersion(): string | null; setLastVersion(lastVersion: string): void; getNotes(): string | null; setNotes(notes: string): void; getTimestamp(): string | null; setTimestamp(timestamp: string): void; getVersion(): string | null; setVersion(version: string): void; } declare class Calibration { dOI: string | null; datasetRange: string | null; equation: string | null; equationIntercept: string | null; equationR2: string | null; equationSlope: string | null; equationSlopeUncertainty: string | null; method: string | null; methodDetail: string | null; notes: string | null; proxyDataset: string | null; seasonality: string | null; targetDataset: string | null; uncertainty: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Calibration; static fromData(id: string, data: Record): Calibration; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Calibration; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getDOI(): string | null; setDOI(dOI: string): void; getDatasetRange(): string | null; setDatasetRange(datasetRange: string): void; getEquation(): string | null; setEquation(equation: string): void; getEquationIntercept(): string | null; setEquationIntercept(equationIntercept: string): void; getEquationR2(): string | null; setEquationR2(equationR2: string): void; getEquationSlope(): string | null; setEquationSlope(equationSlope: string): void; getEquationSlopeUncertainty(): string | null; setEquationSlopeUncertainty(equationSlopeUncertainty: string): void; getMethod(): string | null; setMethod(method: string): void; getMethodDetail(): string | null; setMethodDetail(methodDetail: string): void; getNotes(): string | null; setNotes(notes: string): void; getProxyDataset(): string | null; setProxyDataset(proxyDataset: string): void; getSeasonality(): string | null; setSeasonality(seasonality: string): void; getTargetDataset(): string | null; setTargetDataset(targetDataset: string): void; getUncertainty(): string | null; setUncertainty(uncertainty: string): void; } declare class Compilation { name: string | null; versions: string[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Compilation; static fromData(id: string, data: Record): Compilation; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Compilation; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getName(): string | null; setName(name: string): void; getVersions(): string[]; setVersions(versions: string[]): void; addVersion(versions: string): void; } declare class InterpretationSeasonality { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: InterpretationSeasonality): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): InterpretationSeasonality | null; } declare class InterpretationSeasonalityConstants { static Oct_May: InterpretationSeasonality; static Jun: InterpretationSeasonality; static Jul: InterpretationSeasonality; static Aug: InterpretationSeasonality; static Annual: InterpretationSeasonality; static Winter: InterpretationSeasonality; static Apr: InterpretationSeasonality; static Apr_Aug: InterpretationSeasonality; static Apr_Dec: InterpretationSeasonality; static Apr_Feb: InterpretationSeasonality; static Apr_Jan: InterpretationSeasonality; static Apr_Jul: InterpretationSeasonality; static Apr_Jun: InterpretationSeasonality; static Apr_Mar: InterpretationSeasonality; static Apr_May: InterpretationSeasonality; static Apr_Nov: InterpretationSeasonality; static Apr_Oct: InterpretationSeasonality; static Apr_Sep: InterpretationSeasonality; static Summer: InterpretationSeasonality; static Aug_Apr: InterpretationSeasonality; static Aug_Dec: InterpretationSeasonality; static Aug_Feb: InterpretationSeasonality; static Aug_Jan: InterpretationSeasonality; static Aug_Jul: InterpretationSeasonality; static Aug_Jun: InterpretationSeasonality; static Aug_Mar: InterpretationSeasonality; static Aug_May: InterpretationSeasonality; static Aug_Nov: InterpretationSeasonality; static Aug_Oct: InterpretationSeasonality; static Aug_Sep: InterpretationSeasonality; static Growing_Season: InterpretationSeasonality; static Coldest_Month: InterpretationSeasonality; static Dec_Apr: InterpretationSeasonality; static Dec_Aug: InterpretationSeasonality; static Dec_Feb: InterpretationSeasonality; static Dec_Jan: InterpretationSeasonality; static Dec_Jul: InterpretationSeasonality; static Dec_Jun: InterpretationSeasonality; static Dec_Mar: InterpretationSeasonality; static Dec_May: InterpretationSeasonality; static Dec_Oct: InterpretationSeasonality; static Dec_Sep: InterpretationSeasonality; static Fall: InterpretationSeasonality; static Feb_Aug: InterpretationSeasonality; static Feb_Apr: InterpretationSeasonality; static Feb_Dec: InterpretationSeasonality; static Feb_Jul: InterpretationSeasonality; static Feb_Jun: InterpretationSeasonality; static Feb_Mar: InterpretationSeasonality; static Feb_May: InterpretationSeasonality; static Feb_Nov: InterpretationSeasonality; static Feb_Oct: InterpretationSeasonality; static Feb_Sep: InterpretationSeasonality; static Jan: InterpretationSeasonality; static Jan_Apr: InterpretationSeasonality; static Jan_Aug: InterpretationSeasonality; static Jan_Feb: InterpretationSeasonality; static Jan_Jul: InterpretationSeasonality; static Jan_Jun: InterpretationSeasonality; static Jan_Mar: InterpretationSeasonality; static Jan_May: InterpretationSeasonality; static Jan_Nov: InterpretationSeasonality; static Jan_Oct: InterpretationSeasonality; static Jan_Sep: InterpretationSeasonality; static May_Sep: InterpretationSeasonality; static Jul_Apr: InterpretationSeasonality; static Jul_Aug: InterpretationSeasonality; static Jul_Dec: InterpretationSeasonality; static Jul_Feb: InterpretationSeasonality; static Jul_Jan: InterpretationSeasonality; static Jul_Jun: InterpretationSeasonality; static Jul_Mar: InterpretationSeasonality; static Jul_May: InterpretationSeasonality; static Jul_Nov: InterpretationSeasonality; static Jul_Oct: InterpretationSeasonality; static Jul_Sep: InterpretationSeasonality; static Jun_Apr: InterpretationSeasonality; static Jun_Aug: InterpretationSeasonality; static Jun_Sep: InterpretationSeasonality; static Jun_Dec: InterpretationSeasonality; static Jun_Feb: InterpretationSeasonality; static Jun_Jan: InterpretationSeasonality; static Jun_Jul: InterpretationSeasonality; static Jun_Mar: InterpretationSeasonality; static Jun_Nov: InterpretationSeasonality; static Jun_Oct: InterpretationSeasonality; static Mar: InterpretationSeasonality; static Mar_Apr: InterpretationSeasonality; static Mar_Aug: InterpretationSeasonality; static Mar_Dec: InterpretationSeasonality; static Mar_Jan: InterpretationSeasonality; static Mar_Jul: InterpretationSeasonality; static Mar_Jun: InterpretationSeasonality; static Mar_May: InterpretationSeasonality; static Mar_Nov: InterpretationSeasonality; static Mar_Oct: InterpretationSeasonality; static Mar_Sep: InterpretationSeasonality; static May_Apr: InterpretationSeasonality; static May_Aug: InterpretationSeasonality; static May_Dec: InterpretationSeasonality; static May_Oct: InterpretationSeasonality; static May_Feb: InterpretationSeasonality; static May_Jan: InterpretationSeasonality; static May_Jul: InterpretationSeasonality; static May_Jun: InterpretationSeasonality; static May_Mar: InterpretationSeasonality; static May_Nov: InterpretationSeasonality; static needsToBeChanged: InterpretationSeasonality; static Nov_Apr: InterpretationSeasonality; static Nov_Aug: InterpretationSeasonality; static Nov_Dec: InterpretationSeasonality; static Nov_Feb: InterpretationSeasonality; static Nov_Jan: InterpretationSeasonality; static Nov_Jul: InterpretationSeasonality; static Nov_Jun: InterpretationSeasonality; static Nov_Mar: InterpretationSeasonality; static Nov_May: InterpretationSeasonality; static Nov_Oct: InterpretationSeasonality; static Nov_Sep: InterpretationSeasonality; static Oct_Apr: InterpretationSeasonality; static Oct_Aug: InterpretationSeasonality; static Oct_Dec: InterpretationSeasonality; static Oct_Feb: InterpretationSeasonality; static Oct_Jan: InterpretationSeasonality; static Oct_Jul: InterpretationSeasonality; static Oct_Jun: InterpretationSeasonality; static Oct_Mar: InterpretationSeasonality; static Oct_Nov: InterpretationSeasonality; static Oct_Sep: InterpretationSeasonality; static Sep_Apr: InterpretationSeasonality; static Sep_Aug: InterpretationSeasonality; static Sep_Dec: InterpretationSeasonality; static Sep_Feb: InterpretationSeasonality; static Sep_Jan: InterpretationSeasonality; static Sep_Jul: InterpretationSeasonality; static Sep_Jun: InterpretationSeasonality; static Sep_Mar: InterpretationSeasonality; static Sep_May: InterpretationSeasonality; static Sep_Nov: InterpretationSeasonality; static Sep_Oct: InterpretationSeasonality; static Spr_Sum: InterpretationSeasonality; static Spring: InterpretationSeasonality; static subannual: InterpretationSeasonality; static Warmest_Month: InterpretationSeasonality; static Wet_Season: InterpretationSeasonality; static Win_Spr: InterpretationSeasonality; } declare class InterpretationVariable { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: InterpretationVariable): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): InterpretationVariable | null; } declare class InterpretationVariableConstants { static C3C4Ratio: InterpretationVariable; static circulationIndex: InterpretationVariable; static circulationVariable: InterpretationVariable; static dissolvedOxygen: InterpretationVariable; static dust: InterpretationVariable; static ELA: InterpretationVariable; static evaporation: InterpretationVariable; static fire: InterpretationVariable; static growingDegreeDays: InterpretationVariable; static hydrologicBalance: InterpretationVariable; static lakeWaterIsotope: InterpretationVariable; static meltwater: InterpretationVariable; static needsToBeReplaced: InterpretationVariable; static P_E: InterpretationVariable; static precipitation: InterpretationVariable; static precipitationDeuteriumExcess: InterpretationVariable; static precipitationIsotope: InterpretationVariable; static productivity: InterpretationVariable; static relativeHumidity: InterpretationVariable; static salinity: InterpretationVariable; static seaIce: InterpretationVariable; static seasonality: InterpretationVariable; static seawaterIsotope: InterpretationVariable; static streamflow: InterpretationVariable; static sunlight: InterpretationVariable; static surfacePressure: InterpretationVariable; static temperature: InterpretationVariable; static upwelling: InterpretationVariable; static windSpeed: InterpretationVariable; } declare class Interpretation { basis: string | null; direction: string | null; local: string | null; mathematicalRelation: string | null; notes: string | null; rank: string | null; scope: string | null; seasonality: InterpretationSeasonality | null; seasonalityGeneral: InterpretationSeasonality | null; seasonalityOriginal: InterpretationSeasonality | null; variable: InterpretationVariable | null; variableDetail: string | null; variableGeneral: string | null; variableGeneralDirection: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Interpretation; static fromData(id: string, data: Record): Interpretation; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Interpretation; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getBasis(): string | null; setBasis(basis: string): void; getDirection(): string | null; setDirection(direction: string): void; getMathematicalRelation(): string | null; setMathematicalRelation(mathematicalRelation: string): void; getNotes(): string | null; setNotes(notes: string): void; getRank(): string | null; setRank(rank: string): void; getScope(): string | null; setScope(scope: string): void; getSeasonality(): InterpretationSeasonality | null; setSeasonality(seasonality: InterpretationSeasonality): void; getSeasonalityGeneral(): InterpretationSeasonality | null; setSeasonalityGeneral(seasonalityGeneral: InterpretationSeasonality): void; getSeasonalityOriginal(): InterpretationSeasonality | null; setSeasonalityOriginal(seasonalityOriginal: InterpretationSeasonality): void; getVariable(): InterpretationVariable | null; setVariable(variable: InterpretationVariable): void; getVariableDetail(): string | null; setVariableDetail(variableDetail: string): void; getVariableGeneral(): string | null; setVariableGeneral(variableGeneral: string): void; getVariableGeneralDirection(): string | null; setVariableGeneralDirection(variableGeneralDirection: string): void; isLocal(): string | null; setLocal(local: string): void; } declare class PaleoProxy { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: PaleoProxy): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): PaleoProxy | null; } declare class PaleoProxyConstants { static accumulation_rate: PaleoProxy; static ACL: PaleoProxy; static Al2O3: PaleoProxy; static alkenone: PaleoProxy; static amoeba: PaleoProxy; static Ba_Al: PaleoProxy; static Ba_Ca: PaleoProxy; static biomarker: PaleoProxy; static BIT: PaleoProxy; static borehole: PaleoProxy; static BSi: PaleoProxy; static bubble_frequency: PaleoProxy; static bulk_density: PaleoProxy; static bulk_sediment: PaleoProxy; static C_N: PaleoProxy; static Ca_K: PaleoProxy; static Ca_Ti: PaleoProxy; static CaCO3: PaleoProxy; static calcification_rate: PaleoProxy; static calcite: PaleoProxy; static carbonate: PaleoProxy; static cellulose: PaleoProxy; static charcoal: PaleoProxy; static chironomid: PaleoProxy; static chlorophyll: PaleoProxy; static chrysophyte_assemblage: PaleoProxy; static cladoceran: PaleoProxy; static coccolithophore: PaleoProxy; static d13C: PaleoProxy; static d15N: PaleoProxy; static d15N_d40Ar: PaleoProxy; static d18O: PaleoProxy; static dD: PaleoProxy; static deuterium_excess: PaleoProxy; static diatom: PaleoProxy; static dinocyst: PaleoProxy; static dry_bulk_density: PaleoProxy; static Eu_Zr: PaleoProxy; static Fe: PaleoProxy; static Fe_Al: PaleoProxy; static foraminifera: PaleoProxy; static GDGT: PaleoProxy; static grain_size: PaleoProxy; static HBI: PaleoProxy; static historical: PaleoProxy; static humification: PaleoProxy; static ice_accumulation: PaleoProxy; static ice_melt: PaleoProxy; static inorganic_carbon: PaleoProxy; static IP25: PaleoProxy; static lake_level: PaleoProxy; static latewood_cellulose: PaleoProxy; static LDI: PaleoProxy; static macrofossils: PaleoProxy; static magnetic: PaleoProxy; static magnetic_susceptibility: PaleoProxy; static mass_accumulation_rate: PaleoProxy; static maximum_latewood_density: PaleoProxy; static Mg: PaleoProxy; static Mg_Ca: PaleoProxy; static multiproxy: PaleoProxy; static Ti: PaleoProxy; static needs_to_be_changed: PaleoProxy; static needsToBeChanged: PaleoProxy; static ostracod: PaleoProxy; static P_aqueous: PaleoProxy; static peat_ash: PaleoProxy; static pH: PaleoProxy; static pollen: PaleoProxy; static radiolaria: PaleoProxy; static Rb: PaleoProxy; static Rb_Sr: PaleoProxy; static reflectance: PaleoProxy; static ring_width: PaleoProxy; static Sr: PaleoProxy; static Sr_Ca: PaleoProxy; static stratigraphy: PaleoProxy; static sulfur: PaleoProxy; static TEX86: PaleoProxy; static Ti_Al: PaleoProxy; static Ti_Ca: PaleoProxy; static TOC: PaleoProxy; static total_nitrogen: PaleoProxy; static varve_thickness: PaleoProxy; } declare class PaleoProxyGeneral { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: PaleoProxyGeneral): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): PaleoProxyGeneral | null; } declare class PaleoProxyGeneralConstants { static biogenic: PaleoProxyGeneral; static cryophysical: PaleoProxyGeneral; static dendrophysical: PaleoProxyGeneral; static elemental: PaleoProxyGeneral; static faunal_assemblage: PaleoProxyGeneral; static floral_assemblage: PaleoProxyGeneral; static isotopic: PaleoProxyGeneral; static mineral: PaleoProxyGeneral; static pyrogenic: PaleoProxyGeneral; static sedimentology: PaleoProxyGeneral; } declare class PaleoUnit { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: PaleoUnit): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): PaleoUnit | null; } declare class PaleoUnitConstants { static atomic_ratio: PaleoUnit; static cgs: PaleoUnit; static cm: PaleoUnit; static cm_kyr: PaleoUnit; static cm_yr: PaleoUnit; static cm3: PaleoUnit; static count: PaleoUnit; static count_century: PaleoUnit; static count_cm2: PaleoUnit; static count_cm2_yr: PaleoUnit; static count_cm3: PaleoUnit; static count_g: PaleoUnit; static count_kyr: PaleoUnit; static count_mL: PaleoUnit; static count_yr: PaleoUnit; static cps: PaleoUnit; static day: PaleoUnit; static degC: PaleoUnit; static degree: PaleoUnit; static fraction: PaleoUnit; static g: PaleoUnit; static g_cm_yr: PaleoUnit; static g_cm2: PaleoUnit; static g_cm2_kyr: PaleoUnit; static g_cm2_yr: PaleoUnit; static g_cm3: PaleoUnit; static g_L: PaleoUnit; static g_m2: PaleoUnit; static g_m2_yr: PaleoUnit; static grayscale: PaleoUnit; static kg_m2_yr: PaleoUnit; static kg_m3: PaleoUnit; static km2: PaleoUnit; static km3: PaleoUnit; static log_mg_L_: PaleoUnit; static m: PaleoUnit; static m3_kg: PaleoUnit; static mg: PaleoUnit; static mg_cm2_yr: PaleoUnit; static mg_g: PaleoUnit; static mg_kg: PaleoUnit; static mg_L: PaleoUnit; static mm: PaleoUnit; static mm_day: PaleoUnit; static mm_season: PaleoUnit; static mm_yr: PaleoUnit; static mmol_mol: PaleoUnit; static months_year: PaleoUnit; static needsToBeChanged: PaleoUnit; static ng: PaleoUnit; static ng_g: PaleoUnit; static peak_area: PaleoUnit; static percent: PaleoUnit; static permil: PaleoUnit; static pH: PaleoUnit; static ppb: PaleoUnit; static ppm: PaleoUnit; static practical_salinity_unit: PaleoUnit; static ratio: PaleoUnit; static SI: PaleoUnit; static ug_cm2_yr: PaleoUnit; static ug_g: PaleoUnit; static um: PaleoUnit; static umol_mol: PaleoUnit; static unitless: PaleoUnit; static yr_14C_BP: PaleoUnit; static yr_AD: PaleoUnit; static yr_b2k: PaleoUnit; static yr_BP: PaleoUnit; static yr_ka: PaleoUnit; static z_score: PaleoUnit; } declare class PaleoVariable { private id; private label; static synonyms: any; constructor(id: string, label: string); equals(value: PaleoVariable): boolean; getLabel(): string; getId(): string; toData(data?: Record): Record; toJson(): string; static fromSynonym(synonym: string): PaleoVariable | null; } declare class PaleoVariableConstants { static ACL: PaleoVariable; static AET_PET: PaleoVariable; static ARM_IRM: PaleoVariable; static ARSTAN: PaleoVariable; static Al: PaleoVariable; static Al2O3: PaleoVariable; static As: PaleoVariable; static BIT: PaleoVariable; static BSi: PaleoVariable; static Ba: PaleoVariable; static Ba_Al: PaleoVariable; static Ba_Ca: PaleoVariable; static Be: PaleoVariable; static Br: PaleoVariable; static C20n_alkenoicAcid: PaleoVariable; static C21n_alkanoicAcid: PaleoVariable; static C22n_alkanoicAcid: PaleoVariable; static C23n_alkanoicAcid: PaleoVariable; static C24n_alkanoicAcid: PaleoVariable; static C25_2n_alkanoicAcid: PaleoVariable; static C25n_alkanoicAcid: PaleoVariable; static C26n_alkanoicAcid: PaleoVariable; static C27n_alkanoicAcid: PaleoVariable; static C28n_alkanoicAcid: PaleoVariable; static C29n_alkanoicAcid: PaleoVariable; static C30n_alkanoicAcid: PaleoVariable; static C31n_alkanoicAcid: PaleoVariable; static C37Alkenone: PaleoVariable; static C37_2Alkenone: PaleoVariable; static C37_3aAlkenone: PaleoVariable; static C37_3bAlkenone: PaleoVariable; static C37_4Alkenone: PaleoVariable; static CBT: PaleoVariable; static CCA1: PaleoVariable; static CCA2: PaleoVariable; static CPI: PaleoVariable; static C_N: PaleoVariable; static Ca: PaleoVariable; static CaCO3: PaleoVariable; static CaO: PaleoVariable; static Ca_K: PaleoVariable; static Ca_Sr: PaleoVariable; static Ca_Ti: PaleoVariable; static Ti_Ca: PaleoVariable; static Cd: PaleoVariable; static Cd_Mn: PaleoVariable; static Cl: PaleoVariable; static Co: PaleoVariable; static Cr: PaleoVariable; static Cu: PaleoVariable; static DWHI: PaleoVariable; static Dd2H: PaleoVariable; static EPS: PaleoVariable; static ElNinoEvent: PaleoVariable; static Eu_Zr: PaleoVariable; static Fe: PaleoVariable; static Fe2O3: PaleoVariable; static Fe_Al: PaleoVariable; static Fe_Ca: PaleoVariable; static Fe_K: PaleoVariable; static Fe_Mn: PaleoVariable; static GDGT: PaleoVariable; static GDGT_0_Cren: PaleoVariable; static IP25: PaleoVariable; static IRM: PaleoVariable; static ITCZ: PaleoVariable; static JulianDay: PaleoVariable; static K2O: PaleoVariable; static K37: PaleoVariable; static K_Al: PaleoVariable; static LDI: PaleoVariable; static LOI: PaleoVariable; static La: PaleoVariable; static MAR: PaleoVariable; static MBT: PaleoVariable; static MS: PaleoVariable; static Si: PaleoVariable; static MXD: PaleoVariable; static Mg: PaleoVariable; static MgO: PaleoVariable; static Mg_Ca: PaleoVariable; static Mn: PaleoVariable; static MnO: PaleoVariable; static Mn_Fe: PaleoVariable; static Mn_Mo: PaleoVariable; static Mo: PaleoVariable; static NO3: PaleoVariable; static nitrate: PaleoVariable; static N_C: PaleoVariable; static Na2O: PaleoVariable; static Ni: PaleoVariable; static PC1: PaleoVariable; static PC3: PaleoVariable; static PC2: PaleoVariable; static Paq: PaleoVariable; static Pb: PaleoVariable; static Picea_Artemisia: PaleoVariable; static Picea_Pinus: PaleoVariable; static Pinus_Artemisia: PaleoVariable; static Poaceae_Ephedra: PaleoVariable; static R570_R630: PaleoVariable; static R650_R700: PaleoVariable; static RABD660670: PaleoVariable; static RAN15: PaleoVariable; static RBAR: PaleoVariable; static Rb: PaleoVariable; static Rb87_Sr86: PaleoVariable; static SO4: PaleoVariable; static sulfate: PaleoVariable; static salinity: PaleoVariable; static Sc: PaleoVariable; static Si_Al: PaleoVariable; static Si_Ti: PaleoVariable; static Sr: PaleoVariable; static Sr_Ca: PaleoVariable; static TDS: PaleoVariable; static TEX86: PaleoVariable; static TIC: PaleoVariable; static TOC: PaleoVariable; static organicCarbon: PaleoVariable; static TOC_TN: PaleoVariable; static Ti: PaleoVariable; static TiO2: PaleoVariable; static Ti_Al: PaleoVariable; static Uk37: PaleoVariable; static UK37: PaleoVariable; static Uk37_: PaleoVariable; static V: PaleoVariable; static V_Al: PaleoVariable; static Y: PaleoVariable; static Zn: PaleoVariable; static Zr: PaleoVariable; static Zr_Al: PaleoVariable; static accumulation: PaleoVariable; static age: PaleoVariable; static age14C: PaleoVariable; static ammonium: PaleoVariable; static amps: PaleoVariable; static aragonite: PaleoVariable; static ash: PaleoVariable; static boron: PaleoVariable; static brGDGT_IIIa: PaleoVariable; static brGDGT_Id: PaleoVariable; static brGDGT_IIIa_: PaleoVariable; static brGDGT_IIIb: PaleoVariable; static brGDGT_IIIb_: PaleoVariable; static brGDGT_IIIc: PaleoVariable; static brGDGT_IIIc_: PaleoVariable; static brGDGT_IIa: PaleoVariable; static brGDGT_IIa_: PaleoVariable; static brGDGT_IIb: PaleoVariable; static brGDGT_IIb_: PaleoVariable; static brGDGT_IIc: PaleoVariable; static brGDGT_IIc_: PaleoVariable; static brGDGT_Ia: PaleoVariable; static brGDGT_Ib: PaleoVariable; static brGDGT_Ic: PaleoVariable; static sampleID: PaleoVariable; static bubbleNumberDensity: PaleoVariable; static bulkDensity: PaleoVariable; static calcificationRate: PaleoVariable; static calcite: PaleoVariable; static carbon: PaleoVariable; static carbonate: PaleoVariable; static charcoal: PaleoVariable; static chloride: PaleoVariable; static circulationIndex: PaleoVariable; static clay: PaleoVariable; static cluster: PaleoVariable; static index: PaleoVariable; static composite: PaleoVariable; static concentration: PaleoVariable; static core: PaleoVariable; static correction: PaleoVariable; static correlationCoefficient: PaleoVariable; static sampleCount: PaleoVariable; static count: PaleoVariable; static d13C: PaleoVariable; static d15N: PaleoVariable; static d18O: PaleoVariable; static d2H: PaleoVariable; static d2HUncertaintyHigh80: PaleoVariable; static d2HUncertaintyLow80: PaleoVariable; static deleteMe: PaleoVariable; static needsToBeChanged: PaleoVariable; static deltaRelativeHumidity: PaleoVariable; static deltaTemperature: PaleoVariable; static density: PaleoVariable; static depth: PaleoVariable; static depthBottom: PaleoVariable; static depthTop: PaleoVariable; static deuteriumExcess: PaleoVariable; static diatom: PaleoVariable; static diatomCount: PaleoVariable; static dinocyst: PaleoVariable; static dolomite: PaleoVariable; static dryBulkDensity: PaleoVariable; static duration: PaleoVariable; static dust: PaleoVariable; static effectivePrecipitation: PaleoVariable; static elevation: PaleoVariable; static zscore: PaleoVariable; static epsilonC28C22: PaleoVariable; static epsilonC28C24: PaleoVariable; static epsilonC29C23: PaleoVariable; static equilibriumLineAltitude: PaleoVariable; static event: PaleoVariable; static eventLayer: PaleoVariable; static facies: PaleoVariable; static feldspar: PaleoVariable; static flood: PaleoVariable; static fluorine: PaleoVariable; static foraminifera: PaleoVariable; static gamma: PaleoVariable; static glacierCoverage: PaleoVariable; static globigerinoidesRuber: PaleoVariable; static grainSize: PaleoVariable; static lithics: PaleoVariable; static grayscale: PaleoVariable; static growing_degree_days: PaleoVariable; static growthRate: PaleoVariable; static hasGap: PaleoVariable; static hasHiatus: PaleoVariable; static hole: PaleoVariable; static humidificationIndex: PaleoVariable; static iceMelt: PaleoVariable; static iceRaftedDebris: PaleoVariable; static inc_coh: PaleoVariable; static isReliable: PaleoVariable; static lakeArea: PaleoVariable; static lakeLevel: PaleoVariable; static lakeTrend: PaleoVariable; static lakeVolume: PaleoVariable; static landscapeCover: PaleoVariable; static percent: PaleoVariable; static latitude: PaleoVariable; static layerThickness: PaleoVariable; static longitude: PaleoVariable; static material: PaleoVariable; static mineralogy: PaleoVariable; static sulfur: PaleoVariable; static needsToBeSplitIntoMultipleColumns: PaleoVariable; static nitrogen: PaleoVariable; static notes: PaleoVariable; static organicMatter: PaleoVariable; static organicNitrogen: PaleoVariable; static oxygen: PaleoVariable; static pH: PaleoVariable; static peat: PaleoVariable; static phosphorus: PaleoVariable; static potassium: PaleoVariable; static precipitation: PaleoVariable; static productivity: PaleoVariable; static pyrite: PaleoVariable; static quartz: PaleoVariable; static reflectance: PaleoVariable; static relativeHumidity: PaleoVariable; static residualChronology: PaleoVariable; static ringWidth: PaleoVariable; static sand: PaleoVariable; static seaIce: PaleoVariable; static section: PaleoVariable; static sedimentDry: PaleoVariable; static sedimentationRate: PaleoVariable; static segmentLength: PaleoVariable; static sequence: PaleoVariable; static silt: PaleoVariable; static site: PaleoVariable; static siteCount: PaleoVariable; static sodium: PaleoVariable; static solarIrradiance: PaleoVariable; static streamflow: PaleoVariable; static temperature: PaleoVariable; static thickness: PaleoVariable; static totalCarbon: PaleoVariable; static totalNitrogen: PaleoVariable; static totalPollen: PaleoVariable; static treeCover: PaleoVariable; static uncertainty: PaleoVariable; static uncertainty1s: PaleoVariable; static uncertainty2s: PaleoVariable; static uncertaintyHigh: PaleoVariable; static uncertaintyHigh1s: PaleoVariable; static uncertaintyLow95: PaleoVariable; static uncertaintyHigh50: PaleoVariable; static uncertaintyHigh90: PaleoVariable; static uncertaintyHigh95: PaleoVariable; static uncertaintyLow: PaleoVariable; static uncertaintyLow1s: PaleoVariable; static uncertaintyLow90: PaleoVariable; static upwelling: PaleoVariable; static uranium: PaleoVariable; static varveThickness: PaleoVariable; static volume: PaleoVariable; static waterContent: PaleoVariable; static waterTableDepth: PaleoVariable; static wetBulkDensity: PaleoVariable; static year: PaleoVariable; } declare class PhysicalSample { housedAt: string | null; iGSN: string | null; name: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): PhysicalSample; static fromData(id: string, data: Record): PhysicalSample; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): PhysicalSample; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getHousedAt(): string | null; setHousedAt(housedAt: string): void; getIGSN(): string | null; setIGSN(iGSN: string): void; getName(): string | null; setName(name: string): void; } declare class Resolution { maxValue: number | null; meanValue: number | null; medianValue: number | null; minValue: number | null; units: PaleoUnit | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Resolution; static fromData(id: string, data: Record): Resolution; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Resolution; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getMaxValue(): number | null; setMaxValue(maxValue: number): void; getMeanValue(): number | null; setMeanValue(meanValue: number): void; getMedianValue(): number | null; setMedianValue(medianValue: number): void; getMinValue(): number | null; setMinValue(minValue: number): void; getUnits(): PaleoUnit | null; setUnits(units: PaleoUnit): void; } declare class Variable { archiveType: ArchiveType | null; calibratedVias: Calibration[]; columnNumber: number | null; composite: boolean | null; description: string | null; foundInDataset: object | null; foundInTable: object | null; instrument: object | null; interpretations: Interpretation[]; maxValue: number | null; meanValue: number | null; medianValue: number | null; minValue: number | null; missingValue: string | null; name: string | null; notes: string | null; partOfCompilations: Compilation[]; physicalSamples: PhysicalSample[]; primary: boolean | null; proxy: PaleoProxy | null; proxyGeneral: PaleoProxyGeneral | null; resolution: Resolution | null; standardVariable: PaleoVariable | null; uncertainty: string | null; uncertaintyAnalytical: string | null; uncertaintyReproducibility: string | null; units: PaleoUnit | null; values: string | null; variableId: string | null; variableType: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Variable; static fromData(id: string, data: Record): Variable; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Variable; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getArchiveType(): ArchiveType | null; setArchiveType(archiveType: ArchiveType): void; getCalibratedVias(): Calibration[]; setCalibratedVias(calibratedVias: Calibration[]): void; addCalibratedVia(calibratedVias: Calibration): void; getColumnNumber(): number | null; setColumnNumber(columnNumber: number): void; getDescription(): string | null; setDescription(description: string): void; getFoundInDataset(): object | null; setFoundInDataset(foundInDataset: object): void; getFoundInTable(): object | null; setFoundInTable(foundInTable: object): void; getInstrument(): object | null; setInstrument(instrument: object): void; getInterpretations(): Interpretation[]; setInterpretations(interpretations: Interpretation[]): void; addInterpretation(interpretations: Interpretation): void; getMaxValue(): number | null; setMaxValue(maxValue: number): void; getMeanValue(): number | null; setMeanValue(meanValue: number): void; getMedianValue(): number | null; setMedianValue(medianValue: number): void; getMinValue(): number | null; setMinValue(minValue: number): void; getMissingValue(): string | null; setMissingValue(missingValue: string): void; getName(): string | null; setName(name: string): void; getNotes(): string | null; setNotes(notes: string): void; getPartOfCompilations(): Compilation[]; setPartOfCompilations(partOfCompilations: Compilation[]): void; addPartOfCompilation(partOfCompilations: Compilation): void; getPhysicalSamples(): PhysicalSample[]; setPhysicalSamples(physicalSamples: PhysicalSample[]): void; addPhysicalSample(physicalSamples: PhysicalSample): void; getProxy(): PaleoProxy | null; setProxy(proxy: PaleoProxy): void; getProxyGeneral(): PaleoProxyGeneral | null; setProxyGeneral(proxyGeneral: PaleoProxyGeneral): void; getResolution(): Resolution | null; setResolution(resolution: Resolution): void; getStandardVariable(): PaleoVariable | null; setStandardVariable(standardVariable: PaleoVariable): void; getUncertainty(): string | null; setUncertainty(uncertainty: string): void; getUncertaintyAnalytical(): string | null; setUncertaintyAnalytical(uncertaintyAnalytical: string): void; getUncertaintyReproducibility(): string | null; setUncertaintyReproducibility(uncertaintyReproducibility: string): void; getUnits(): PaleoUnit | null; setUnits(units: PaleoUnit): void; getValues(): string | null; setValues(values: string): void; getVariableId(): string | null; setVariableId(variableId: string): void; getVariableType(): string | null; setVariableType(variableType: string): void; isComposite(): boolean | null; setComposite(composite: boolean): void; isPrimary(): boolean | null; setPrimary(primary: boolean): void; } interface VariableMetadata { hasValues?: boolean; [key: string]: any; } type DataFrameData = { [K in string]: any[]; }; interface DataFrame { data: DataFrameData; metadata: Record; } interface DataList { data: any[]; metadata: VariableMetadata[]; } declare class DataTable { fileName: string | null; missingValue: string | null; variables: Variable[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): DataTable; static fromData(id: string, data: Record): DataTable; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): DataTable; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getFileName(): string | null; setFileName(fileName: string): void; getMissingValue(): string | null; setMissingValue(missingValue: string): void; getVariables(): Variable[]; setVariables(variables: Variable[]): void; addVariable(variables: Variable): void; /** * Get data as a DataFrame-like structure * @param useStandardNames Whether to use standard variable names instead of custom names * @returns Object containing data and metadata */ getDataFrame(useStandardNames?: boolean): DataFrame; getDataList(): DataList; /** * Set data from a DataFrame-like structure * @param data Object containing data and metadata */ setDataFrame(data: DataFrame): void; /** * Set data from a DataFrame-like structure * @param data Object containing data and metadata */ setDataList(data: DataList): void; } declare class Model { code: string | null; distributionTables: DataTable[]; ensembleTables: DataTable[]; summaryTables: DataTable[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Model; static fromData(id: string, data: Record): Model; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Model; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getCode(): string | null; setCode(code: string): void; getDistributionTables(): DataTable[]; setDistributionTables(distributionTables: DataTable[]): void; addDistributionTable(distributionTables: DataTable): void; getEnsembleTables(): DataTable[]; setEnsembleTables(ensembleTables: DataTable[]): void; addEnsembleTable(ensembleTables: DataTable): void; getSummaryTables(): DataTable[]; setSummaryTables(summaryTables: DataTable[]): void; addSummaryTable(summaryTables: DataTable): void; } declare class ChronData { measurementTables: DataTable[]; modeledBy: Model[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): ChronData; static fromData(id: string, data: Record): ChronData; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): ChronData; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getMeasurementTables(): DataTable[]; setMeasurementTables(measurementTables: DataTable[]): void; addMeasurementTable(measurementTables: DataTable): void; getModeledBy(): Model[]; setModeledBy(modeledBy: Model[]): void; addModeledBy(modeledBy: Model): void; } declare class Person { name: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Person; static fromData(id: string, data: Record): Person; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Person; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getName(): string | null; setName(name: string): void; } declare class Funding { fundingAgency: string | null; fundingCountry: string | null; grants: string[]; investigators: Person[]; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Funding; static fromData(id: string, data: Record): Funding; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Funding; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getFundingAgency(): string | null; setFundingAgency(fundingAgency: string): void; getFundingCountry(): string | null; setFundingCountry(fundingCountry: string): void; getGrants(): string[]; setGrants(grants: string[]): void; addGrant(grants: string): void; getInvestigators(): Person[]; setInvestigators(investigators: Person[]): void; addInvestigator(investigators: Person): void; } declare class Location { continent: string | null; coordinates: string | null; coordinatesFor: object | null; country: string | null; countryOcean: string | null; description: string | null; elevation: string | null; geometryType: string | null; latitude: string | null; locationName: string | null; locationType: string | null; longitude: string | null; notes: string | null; ocean: string | null; siteName: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Location; static fromData(id: string, data: Record): Location; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Location; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getContinent(): string | null; setContinent(continent: string): void; getCoordinates(): string | null; setCoordinates(coordinates: string): void; getCoordinatesFor(): object | null; setCoordinatesFor(coordinatesFor: object): void; getCountry(): string | null; setCountry(country: string): void; getCountryOcean(): string | null; setCountryOcean(countryOcean: string): void; getDescription(): string | null; setDescription(description: string): void; getElevation(): string | null; setElevation(elevation: string): void; getGeometryType(): string | null; setGeometryType(geometryType: string): void; getLatitude(): string | null; setLatitude(latitude: string): void; getLocationName(): string | null; setLocationName(locationName: string): void; getLocationType(): string | null; setLocationType(locationType: string): void; getLongitude(): string | null; setLongitude(longitude: string): void; getNotes(): string | null; setNotes(notes: string): void; getOcean(): string | null; setOcean(ocean: string): void; getSiteName(): string | null; setSiteName(siteName: string): void; } declare class PaleoData { measurementTables: DataTable[]; modeledBy: Model[]; name: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): PaleoData; static fromData(id: string, data: Record): PaleoData; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): PaleoData; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getMeasurementTables(): DataTable[]; setMeasurementTables(measurementTables: DataTable[]): void; addMeasurementTable(measurementTables: DataTable): void; getModeledBy(): Model[]; setModeledBy(modeledBy: Model[]): void; addModeledBy(modeledBy: Model): void; getName(): string | null; setName(name: string): void; } declare class Publication { abstract: string | null; authors: Person[]; citation: string | null; citeKey: string | null; dOI: string | null; dataUrls: string[]; firstAuthor: Person | null; institution: string | null; issue: string | null; journal: string | null; pages: string | null; publicationType: string | null; publisher: string | null; report: string | null; title: string | null; urls: string[]; volume: string | null; year: number | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Publication; static fromData(id: string, data: Record): Publication; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Publication; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getAbstract(): string | null; setAbstract(abstract: string): void; getAuthors(): Person[]; setAuthors(authors: Person[]): void; addAuthor(authors: Person): void; getCitation(): string | null; setCitation(citation: string): void; getCiteKey(): string | null; setCiteKey(citeKey: string): void; getDOI(): string | null; setDOI(dOI: string): void; getDataUrls(): string[]; setDataUrls(dataUrls: string[]): void; addDataUrl(dataUrls: string): void; getFirstAuthor(): Person | null; setFirstAuthor(firstAuthor: Person): void; getInstitution(): string | null; setInstitution(institution: string): void; getIssue(): string | null; setIssue(issue: string): void; getJournal(): string | null; setJournal(journal: string): void; getPages(): string | null; setPages(pages: string): void; getPublicationType(): string | null; setPublicationType(publicationType: string): void; getPublisher(): string | null; setPublisher(publisher: string): void; getReport(): string | null; setReport(report: string): void; getTitle(): string | null; setTitle(title: string): void; getUrls(): string[]; setUrls(urls: string[]): void; addUrl(urls: string): void; getVolume(): string | null; setVolume(volume: string): void; getYear(): number | null; setYear(year: number): void; } declare class Dataset { archiveType: ArchiveType | null; changeLogs: ChangeLog[]; chronData: ChronData[]; collectionName: string | null; collectionYear: string | null; compilationNest: string | null; contributors: Person[]; creators: Person[]; dataSource: string | null; datasetId: string | null; fundings: Funding[]; investigators: Person[]; location: Location | null; name: string | null; notes: string | null; originalDataUrl: string | null; paleoData: PaleoData[]; publications: Publication[]; spreadsheetLink: string | null; version: string | null; protected _id: string; protected _type: string; protected _misc: Record; protected _ontns: string; protected _ns: string; constructor(); getId(): string; getType(): string; getMisc(): Record; static fromDictionary(data: Record): Dataset; static fromData(id: string, data: Record): Dataset; toData(data?: Record): Record; toJson(): Record; static fromJson(data: Record): Dataset; setNonStandardProperty(key: string, value: unknown): void; getNonStandardProperty(key: string): unknown; getAllNonStandardProperties(): Record; addNonStandardProperty(key: string, value: unknown): void; getArchiveType(): ArchiveType | null; setArchiveType(archiveType: ArchiveType): void; getChangeLogs(): ChangeLog[]; setChangeLogs(changeLogs: ChangeLog[]): void; addChangeLog(changeLogs: ChangeLog): void; getChronData(): ChronData[]; setChronData(chronData: ChronData[]): void; addChronData(chronData: ChronData): void; getCollectionName(): string | null; setCollectionName(collectionName: string): void; getCollectionYear(): string | null; setCollectionYear(collectionYear: string): void; getCompilationNest(): string | null; setCompilationNest(compilationNest: string): void; getContributors(): Person[]; setContributors(contributors: Person[]): void; addContributor(contributors: Person): void; getCreators(): Person[]; setCreators(creators: Person[]): void; addCreator(creators: Person): void; getDataSource(): string | null; setDataSource(dataSource: string): void; getDatasetId(): string | null; setDatasetId(datasetId: string): void; getFundings(): Funding[]; setFundings(fundings: Funding[]): void; addFunding(fundings: Funding): void; getInvestigators(): Person[]; setInvestigators(investigators: Person[]): void; addInvestigator(investigators: Person): void; getLocation(): Location | null; setLocation(location: Location): void; getName(): string | null; setName(name: string): void; getNotes(): string | null; setNotes(notes: string): void; getOriginalDataUrl(): string | null; setOriginalDataUrl(originalDataUrl: string): void; getPaleoData(): PaleoData[]; setPaleoData(paleoData: PaleoData[]): void; addPaleoData(paleoData: PaleoData): void; getPublications(): Publication[]; setPublications(publications: Publication[]): void; addPublication(publications: Publication): void; getSpreadsheetLink(): string | null; setSpreadsheetLink(spreadsheetLink: string): void; getVersion(): string | null; setVersion(version: string): void; } declare class LiPD extends RDFGraph { /** * The LiPD class describes a LiPD (Linked Paleo Data) object. It contains an RDF Graph which is serialization * of the LiPD data into an RDF graph containing terms from the LiPD Ontology. * @param store Optional N3 store to initialize with * @param quiet Whether to suppress log messages * @param endpoint Optional SPARQL endpoint URL * @param auth Optional authentication credentials for the SPARQL endpoint */ constructor(store?: Store, quiet?: boolean, endpoint?: string, auth?: AuthCredentials); /** * Load LiPD files from a directory * @param dirPath Path to the directory containing LiPD files * @param standardize Whether to standardize the data * @param addLabels Whether to add labels */ loadFromDir(dirPath: string, standardize?: boolean, addLabels?: boolean): Promise; /** * Load LiPD files * @param lipdFiles Array of paths to LiPD files (can also be URLs) * @param standardize Whether to standardize the data * @param addLabels Whether to add labels */ load(lipdFiles: string | string[], standardize?: boolean, addLabels?: boolean): Promise; /** * Load LiPD file from a File object (for browser file input) * @param file File object from HTML5 file input * @param standardize Whether to standardize the data * @param addLabels Whether to add labels */ loadFromFile(file: File, standardize?: boolean, addLabels?: boolean): Promise; /** * Get LiPD JSON for a dataset * @param dsname Dataset ID * @returns LiPD JSON */ getLipd(dsname: string): any; /** * Create LiPD file for a dataset * @param dsname Dataset ID * @param lipdFile Path to LiPD file * @returns LiPD JSON */ createLipd(dsname: string, lipdFile: string): Promise; /** * Get dataset(s) from the graph and returns the popped LiPD object * @param dsnames Dataset name(s) to get * @returns LiPD object with the retrieved dataset(s) */ get(dsnames: string | string[]): LiPD; /** * Pop dataset(s) from the graph and returns the popped LiPD object * @param dsnames Dataset name(s) to be popped * @returns LiPD object with the popped dataset(s) */ pop(dsnames: string | string[]): LiPD; /** * Remove dataset(s) from the graph * @param dsnames Dataset name(s) to be removed */ remove(dsnames: string | string[]): void; /** * Get all dataset names * @returns List of dataset names */ getAllDatasetNames(): Promise; /** * Get all dataset IDs * @returns List of dataset IDs */ getAllDatasetIds(): Promise; /** * Get all archive types * @returns List of archive types */ getAllArchiveTypes(): Promise; /** * Get all datasets as Dataset class instances * @returns List of Dataset objects * * @example * ```typescript * const lipd = new LiPD(); * lipd.load('path/to/file.lpd').then(() => { * lipd.getDatasets().then(datasets => { * // Work with dataset objects * console.log(datasets[0].getName()); * }); * }); * ``` */ getDatasets(): Promise; /** * Loads instances of Dataset class into the LiPD graph * @param datasets List of Dataset objects * * @example * ```typescript * // Load datasets from one LiPD object to another * const lipd1 = new LiPD(); * lipd1.load('path/to/file.lpd').then(() => { * lipd1.getDatasets().then(datasets => { * // Modify datasets if needed * * // Create a new LiPD instance and load the datasets * const lipd2 = new LiPD(); * lipd2.loadDatasets(datasets); * }); * }); * ``` */ loadDatasets(datasets: Dataset[]): void; /** * Generate a unique ID with a given prefix * @param prefix Prefix for the ID (default: 'PYD') * @returns Unique formatted ID * @private */ private _generateUniqueId; /** * Fix missing IDs in a dataset * @param ds Dataset to fix * @private */ private _fixMissingIds; /** * Convert the LiPD object to a LiPDSeries object * @returns LiPDSeries object */ toLipdSeries(): LiPDSeries; /** * Filter datasets by name * @param datasetName Dataset name to filter by * @returns New LiPD object with filtered datasets */ filterByDatasetName(datasetName: string): Promise; /** * Filter datasets by compilation name * @param compilationName Compilation name to filter by * @returns New LiPD object with filtered datasets */ filterByCompilationName(compilationName: string): Promise; serialize(type?: string): Promise; /** * Filter datasets by time interval * @param timeBound Minimum and maximum age values * @param timeBoundType Type of querying to perform * @param recordLength Minimum record length * @returns New LiPD object with filtered datasets */ filterByTime(timeBound: [number, number], timeBoundType?: 'any' | 'entire' | 'entirely', recordLength?: number): Promise; /** * Updates local LiPD Graph for datasets to remote endpoint * @param dsnames Array of dataset names * @param batchSize Number of quads to include in each update batch (default: 100) * * @example * ```typescript * // Update datasets to remote endpoint * const lipd = new LiPD(); * lipd.setEndpoint("https://linkedearth.graphdb.mint.isi.edu/repositories/LiPDVerse-dynamic"); * // Set authentication if needed * lipd.setAuth({ username: "user", password: "pass" }); * lipd.updateRemoteDatasets(["MyDataset1", "MyDataset2"], 100); * ``` */ updateRemoteDatasets(dsnames: string | string[], batchSize?: number): Promise; /** * Convert an array of quads to an N-Quads string */ private _quadsToNQuads; /** * Derive the /statements endpoint from this.endpoint */ private _getStatementsEndpoint; /** * Builds an INSERT DATA query for a batch of quads * @param quads Array of quads to insert * @param graphUri URI of the graph to insert into * @returns SPARQL INSERT query * @private */ private _buildInsertQuery; /** * Loads remote datasets into cache if a remote endpoint is set * @param dsnames Array of dataset names * @param loadDefaultGraph Whether to load the default graph (default: true) * * @example * ```typescript * // Fetch LiPD data from remote RDF Graph * const lipd = new LiPD(); * lipd.setEndpoint("https://linkedearth.graphdb.mint.isi.edu/repositories/LiPDVerse-dynamic"); * // Set authentication if needed * lipd.setAuth({ username: "user", password: "pass" }); * lipd.loadRemoteDatasets(["Ocn-MadangLagoonPapuaNewGuinea.Kuhnert.2001", "MD98_2181.Stott.2007"]); * lipd.getAllDatasetNames().then(names => console.log(names)); * ``` */ loadRemoteDatasets(dsnames: string | string[], loadDefaultGraph?: boolean): Promise; /** * Build a full LiPD (BagIt) archive entirely in-memory – browser-safe * @param dsname Dataset name to export * @param opts Options { includeCsv?: boolean } * @returns Blob in browsers, Buffer in Node */ createLipdBrowser(dsname: string, opts?: { includeCsv?: boolean; }): Promise; private _generateCsvData; private _tableToCsv; /** * Remove values from variables in a LiPD JSON object. * This is necessary because values are typically stored in CSV files, * not directly in the metadata.jsonld file. * @param lipdJson The LiPD JSON object to process. * @returns A new LiPD JSON object with values removed from variables. * @private */ private _removeValuesFromVariables; /** * Helper to check if an object looks like a variable object. * Variables typically have properties like variableId, variableName, values, units, etc. * @param obj The object to check. * @returns True if it looks like a variable object, false otherwise. * @private */ private _isVariableObject; } /** * Log levels enum */ declare enum LogLevel { DEBUG = 0, INFO = 1, WARN = 2, ERROR = 3 } /** * Logger class for handling logs in the extension */ declare class Logger { private static instance; private outputChannel; private logLevel; /** * Get the singleton instance of Logger */ static getInstance(): Logger; /** * Private constructor to enforce singleton pattern */ private constructor(); /** * Initialize the logger with an output channel * @param channel VS Code output channel * @param level Initial log level */ initialize(channel?: any, level?: LogLevel): void; /** * Set the current log level * @param level Log level to set */ setLogLevel(level: LogLevel): void; /** * Get the current log level * @returns Current log level */ getLogLevel(): LogLevel; /** * Log a debug message * @param message Message to log * @param args Additional arguments for formatting */ debug(message: string, ...args: any[]): void; /** * Log an info message * @param message Message to log * @param args Additional arguments for formatting */ info(message: string, ...args: any[]): void; /** * Log a warning message * @param message Message to log * @param args Additional arguments for formatting */ warn(message: string, ...args: any[]): void; /** * Log an error message * @param message Message to log * @param args Additional arguments for formatting */ error(message: string, ...args: any[]): void; /** * Show the output channel */ show(): void; /** * Internal log method * @param level Log level as string * @param message Message to log * @param args Additional arguments for formatting */ private log; /** * Format a message with arguments (simple printf-like format) * @param message Base message with placeholders * @param args Arguments to insert * @returns Formatted message */ private formatMessage; } interface SynonymEntry { id: string; label: string; } interface SynonymCollection { [key: string]: SynonymEntry; } interface ArchiveTypes { ArchiveType?: SynonymCollection; } interface InterpretationTypes { InterpretationVariable?: SynonymCollection; InterpretationSeasonality?: SynonymCollection; } interface VariableTypes { PaleoVariable?: SynonymCollection; ChronVariable?: SynonymCollection; } interface UnitTypes { PaleoUnit?: SynonymCollection; ChronUnit?: SynonymCollection; } interface ProxyTypes { PaleoProxy?: SynonymCollection; PaleoProxyGeneral?: SynonymCollection; ChronProxy?: SynonymCollection; ChronProxyGeneral?: SynonymCollection; } interface SynonymsType { ARCHIVES: ArchiveTypes; INTERPRETATION: InterpretationTypes; VARIABLES?: VariableTypes; PROXIES?: ProxyTypes; UNITS?: UnitTypes; } declare const SCHEMA: { Dataset: { '@id': string[]; '@toJson_pre': string[]; datasetId: { name: string; }; dataSetName: { name: string; alternates: string[]; }; dataSource: { name: string; }; originalDataURL: { name: string; alternates: string[]; }; dataContributor: { name: string; schema: string; alternates: string[]; fromJson: string; multiple: boolean; }; archiveType: { name: string; alternates: string[]; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; changelog: { name: string; schema: string; multiple: boolean; }; notes: { name: string; }; collectionName: { name: string; alternates: string[]; }; collectionYear: { name: string; }; investigator: { name: string; alternates: string[]; schema: string; multiple: boolean; fromJson: string; }; creator: { name: string; schema: string; multiple: boolean; fromJson: string; }; funding: { name: string; multiple: boolean; schema: string; }; pub: { name: string; multiple: boolean; schema: string; }; geo: { name: string; schema: string; fromJson: string; toJson: string; }; paleoData: { name: string; multiple: boolean; schema: string; }; chronData: { name: string; multiple: boolean; schema: string; }; googleSpreadSheetKey: { name: string; fromJson: string; toJson: string; }; dataSetVersion: { name: string; }; compilation_nest: { name: string; alternates: string[]; }; }; Compilation: { '@id': string[]; compilationName: { name: string; }; compilationVersion: { name: string; multiple: boolean; }; }; ChangeLog: { '@id': string[]; '@category': string; curator: { name: string; }; version: { name: string; }; lastVersion: { name: string; }; timestamp: { name: string; }; changes: { name: string; multiple: boolean; type: string; schema: string; fromJson: string; toJson: string; }; notes: { name: string; }; }; Change: { '@id': string[]; name: { name: string; }; notes: { name: string; multiple: boolean; }; }; Funding: { '@id': string[]; agency: { name: string; alternates: string[]; }; grant: { name: string; multiple: boolean; alternates: string[]; }; country: { name: string; alternates: string[]; }; investigator: { name: string; schema: string; multiple: boolean; fromJson: string; }; }; Publication: { '@id': string[]; title: { name: string; }; abstract: { name: string; }; institution: { name: string; }; issue: { name: string; }; journal: { name: string; }; volume: { name: string; type: string; }; pages: { name: string; }; year: { name: string; type: string; alternates: string[]; }; publisher: { name: string; }; report: { name: string; }; type: { name: string; }; citation: { name: string; type: string; }; citeKey: { name: string; type: string; }; url: { name: string; alternates: string[]; multiple: boolean; }; dataUrl: { name: string; alternates: string[]; multiple: boolean; }; doi: { name: string; type: string; alternates: string[]; }; author: { name: string; alternates: string[]; schema: string; multiple: boolean; fromJson: string; }; firstauthor: { name: string; alternates: string[]; schema: string; fromJson: string; }; }; PaleoData: { '@id': string[]; paleoDataName: { name: string; }; measurementTable: { alternates: string[]; name: string; multiple: boolean; schema: string; }; model: { alternates: string[]; name: string; multiple: boolean; schema: string; }; }; ChronData: { '@id': string[]; measurementTable: { alternates: string[]; name: string; multiple: boolean; schema: string; }; model: { alternates: string[]; name: string; multiple: boolean; schema: string; }; }; Model: { '@id': string[]; method: { name: string; }; summaryTable: { name: string; multiple: boolean; schema: string; }; ensembleTable: { name: string; multiple: boolean; schema: string; }; distributionTable: { name: string; multiple: boolean; schema: string; }; }; DataTable: { '@id': string[]; toJson: string[]; fromJson: string[]; filename: { name: string; }; columns: { name: string; multiple: boolean; schema: string; }; missingValue: { name: string; }; }; Variable: { '@id': string[]; '@fromJson': string[]; '@toJson_pre': string[]; '@toJson': string[]; number: { name: string; type: string; }; TSid: { name: string; alternates: string[]; }; variableName: { name: string; }; variableType: { name: string; }; archiveType: { name: string; alternates: string[]; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; units: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; missingValue: { name: string; }; hasMaxValue: { name: string; alternates: string[]; type: string; }; hasMinValue: { name: string; alternates: string[]; type: string; }; hasMeanValue: { name: string; alternates: string[]; type: string; }; hasMedianValue: { name: string; alternates: string[]; type: string; }; description: { name: string; }; isPrimary: { name: string; type: string; }; isComposite: { name: string; type: string; }; measurementInstrument: { name: string; type: string; category: string; }; calibration: { name: string; schema: string; type: string; multiple: boolean; }; interpretation: { name: string; schema: string; category: string; type: string; multiple: boolean; }; resolution: { name: string; category: string; schema: string; type: string; alternates: string[]; }; physicalSample: { name: string; schema: string; category: string; alternates: string[]; type: string; multiple: boolean; }; uncertainty: { name: string; }; uncertaintyAnalytical: { name: string; }; uncertaintyReproducibility: { name: string; }; proxy: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; proxyGeneral: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; inCompilationBeta: { name: string; schema: string; category: string; type: string; multiple: boolean; }; notes: { name: string; alternates: string[]; }; hasValues: { type: string; }; foundInTable: { type: string; }; foundInDataset: { type: string; }; hasStandardVariable: { type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; }; PhysicalSample: { hasidentifier: { name: string; }; hasname: { name: string; }; housedat: { name: string; }; }; Resolution: { '@id': string[]; '@toJson_pre': string[]; hasMaxValue: { name: string; alternates: string[]; type: string; }; hasMinValue: { name: string; alternates: string[]; type: string; }; hasMeanValue: { name: string; alternates: string[]; type: string; }; hasMedianValue: { name: string; alternates: string[]; type: string; }; units: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; }; Location: { '@id': string[]; coordinates: { type: string; class_type: string; }; coordinatesFor: { type: string; }; type: { name: string; }; continent: { name: string; }; country: { name: string; }; countryOcean: { name: string; }; description: { name: string; }; elevation: { name: string; }; geometryType: { name: string; }; latitude: { name: string; }; longitude: { name: string; }; locationName: { name: string; alternates: string[]; }; ocean: { name: string; alternates: string[]; }; siteName: { name: string; }; notes: { name: string; }; }; Interpretation: { '@id': string[]; '@fromJson': string[]; '@toJson_pre': string[]; variable: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; variableGeneral: { name: string; alternates: string[]; }; variableGeneralDirection: { name: string; alternates: string[]; }; variableDetail: { name: string; alternates: string[]; }; seasonality: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; seasonalityOriginal: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; seasonalityGeneral: { name: string; type: string; synonyms: SynonymCollection | undefined; class_range: string; skip_auto_convert_to_json: boolean; }; notes: { name: string; }; rank: { name: string; }; basis: { name: string; }; scope: { name: string; }; mathematicalRelation: { name: string; }; direction: { name: string; alternates: string[]; }; isLocal: { name: string; alternates: string[]; }; }; Calibration: { '@id': string[]; '@fromJson': string[]; '@toJson': string[]; datasetRange: { name: string; }; doi: { name: string; alternates: string[]; }; equation: { name: string; alternates: string[]; }; equationIntercept: { name: string; }; equationR2: { name: string; }; equationSlope: { name: string; }; equationSlopeUncertainty: { name: string; }; method: { name: string; }; methodDetail: { name: string; }; proxyDataset: { name: string; alternates: string[]; }; targetDataset: { name: string; alternates: string[]; }; hasSeasonality: { name: string; alternates: string[]; }; notes: { name: string; alternates: string[]; }; uncertainty: { name: string; alternates: string[]; }; }; Person: { '@id': string[]; name: { name: string; }; }; }; declare const SYNONYMS: SynonymsType; declare const RSYNONYMS: { [id: string]: string; }; export { ArchiveType, ArchiveTypeConstants, ArchiveTypes, Calibration, Change, ChangeLog, ChronData, Compilation, DataTable, Dataset, Funding, Interpretation, InterpretationSeasonality, InterpretationSeasonalityConstants, InterpretationTypes, InterpretationVariable, InterpretationVariableConstants, LiPD, LiPDSeries, Location, LogLevel, Logger, Model, PaleoData, PaleoProxy, PaleoProxyConstants, PaleoProxyGeneral, PaleoProxyGeneralConstants, PaleoUnit, PaleoUnitConstants, PaleoVariable, PaleoVariableConstants, Person, PhysicalSample, ProxyTypes, Publication, RSYNONYMS, Resolution, SCHEMA, SYNONYMS, SynonymCollection, SynonymEntry, SynonymsType, UnitTypes, Variable, VariableTypes };