/**
 * Copyright (c) 2023-2025 mol* contributors, licensed under MIT, See LICENSE file for more info.
 *
 * @author Adam Midlik <midlik@gmail.com>
 * @author David Sehnal <david.sehnal@gmail.com>
 */
import { Column, Table } from '../../../mol-data/db.js';
import { Choice } from '../../../mol-util/param-choice.js';
/** Names of allowed MVS annotation schemas (values for the annotation schema parameter) */
export type MVSAnnotationSchema = Choice.Values<typeof MVSAnnotationSchema>;
export declare const MVSAnnotationSchema: Choice<"atom" | "residue" | "entity" | "chain" | "whole_structure" | "auth_chain" | "auth_residue" | "residue_range" | "auth_residue_range" | "auth_atom" | "all_atomic", "all_atomic">;
/** Represents a set of criteria for selection of atoms in a model (in `all_atomic` schema).
 * Missing/undefined values mean that we do not care about that specific atom property. */
export type MVSAnnotationRow = Partial<Table.Row<typeof AllAtomicCifAnnotationSchema>>;
/** Get CIF schema definition for given annotation schema name */
export declare function getCifAnnotationSchema<K extends MVSAnnotationSchema>(schemaName: K): Pick<typeof AllAtomicCifAnnotationSchema, (typeof FieldsForSchemas)[K][number]>;
/** Definition of `all_atomic` schema for CIF (other atomic schemas are subschemas of this one) */
declare const AllAtomicCifAnnotationSchema: {
    /** Tag for grouping multiple annotation rows with the same `group_id` (e.g. to show one label for two chains);
     * if the `group_id` is not given, each row is processed separately */
    group_id: Column.Schema.Str;
    label_entity_id: Column.Schema.Str;
    label_asym_id: Column.Schema.Str;
    auth_asym_id: Column.Schema.Str;
    label_seq_id: Column.Schema.Int;
    auth_seq_id: Column.Schema.Int;
    pdbx_PDB_ins_code: Column.Schema.Str;
    /** Minimum label_seq_id (inclusive) */
    beg_label_seq_id: Column.Schema.Int;
    /** Maximum label_seq_id (inclusive) */
    end_label_seq_id: Column.Schema.Int;
    /** Minimum auth_seq_id (inclusive) */
    beg_auth_seq_id: Column.Schema.Int;
    /** Maximum auth_seq_id (inclusive) */
    end_auth_seq_id: Column.Schema.Int;
    label_comp_id: Column.Schema.Str;
    auth_comp_id: Column.Schema.Str;
    /** 0-based residue index in the source file */
    residue_index: Column.Schema.Int;
    /** Atom name like 'CA', 'N', 'O'... */
    label_atom_id: Column.Schema.Str;
    /** Atom name like 'CA', 'N', 'O'... */
    auth_atom_id: Column.Schema.Str;
    /** Element symbol like 'H', 'He', 'Li', 'Be' (case-insensitive)... */
    type_symbol: Column.Schema.Str;
    /** Unique atom identifier across conformations (_atom_site.id) */
    atom_id: Column.Schema.Int;
    /** 0-based index of the atom in the source data */
    atom_index: Column.Schema.Int;
    /** Instance identifier to distinguish instances of the same chain created by applying different symmetry operators,
     * like 'ASM-X0-1' for assemblies or '1_555' for crystals */
    instance_id: Column.Schema.Str;
};
/** Allowed fields (i.e. CIF columns or JSON keys) for each annotation schema
 * (other fields will just be ignored) */
declare const FieldsForSchemas: {
    whole_structure: "group_id"[];
    entity: ("label_entity_id" | "group_id")[];
    chain: ("label_asym_id" | "label_entity_id" | "group_id")[];
    auth_chain: ("auth_asym_id" | "group_id")[];
    residue: ("label_asym_id" | "label_entity_id" | "label_seq_id" | "group_id" | "residue_index")[];
    auth_residue: ("auth_asym_id" | "auth_seq_id" | "pdbx_PDB_ins_code" | "group_id" | "residue_index")[];
    residue_range: ("label_asym_id" | "label_entity_id" | "beg_label_seq_id" | "end_label_seq_id" | "group_id")[];
    auth_residue_range: ("auth_asym_id" | "beg_auth_seq_id" | "end_auth_seq_id" | "group_id")[];
    atom: ("label_asym_id" | "label_atom_id" | "label_entity_id" | "label_seq_id" | "type_symbol" | "group_id" | "atom_id" | "residue_index" | "atom_index")[];
    auth_atom: ("auth_asym_id" | "auth_atom_id" | "auth_seq_id" | "type_symbol" | "pdbx_PDB_ins_code" | "group_id" | "atom_id" | "residue_index" | "atom_index")[];
    all_atomic: (keyof typeof AllAtomicCifAnnotationSchema)[];
};
export {};