define ['ngmocks', 'lodash', 'expect', 'moment', 'subject', 'helpers'], (ng, _, expect, moment) -> describe 'Unit Testing the Subject Service', -> # The mock Subject service module. Subject = null # The mock Angular $http service provider. $httpBackend = null $rootScope = null $timeout = null # The fetched subject subject = null # The mock objects. mock = subject: _id: 's1' project: 'QIN_Test' collection: 'Breast' number: 1 birth_date: moment('Aug 21, 1986', 'MMM DD, YYYY').valueOf() encounters: [ { _cls: 'Session' number: 1 acquisition_date: moment('Jul 1, 2013', 'MMM DD, YYYY').valueOf() detail: 'sd1' modelings: [ resource: 'pk_01' protocol: 'mp1' source: registration: 'rp1' result: delta_k_trans: name: "path/to/first/delta_k_trans.nii.gz" average: 2.3 label_map: name: "path/to/first/delta_k_trans_color.nii.gz" color_table: "path/to/color_table.txt" ] } { _cls: 'Session' number: 2 acquisition_date: moment('Aug 1, 2013', 'MMM DD, YYYY').valueOf() detail: 'sd2' modelings: [ resource: 'pk_02' protocol: 'mp1' source: registration: 'rp1' result: delta_k_trans: name: "path/to/second/delta_k_trans.nii.gz" average: 2.4 label_map: name: "path/to/second/delta_k_trans_color.nii.gz" color_table: "path/to/color_table.txt" ] } { _cls: 'BreastSurgery' date: moment('Jul 12, 2013', 'MMM DD, YYYY').valueOf() pathology: _cls: 'PathologyReport' tumors: [ _cls: 'BreastPathology' tnm: size: prefix: 'p' tumor_size: 3 ] } ] treatments: [ treatment_type: 'neodjuvant' start_date: moment('Jun 4, 2013', 'MMM DD, YYYY').valueOf() end_date: moment('Jul 16, 2013', 'MMM DD, YYYY').valueOf() dosages: [ { agent: _cls: 'Drug' name: 'trastuzumab' amount: 2.3 start_date: moment('Jun 4, 2013', 'MMM DD, YYYY').valueOf() duration: 20 } { agent: _cls: 'Drug' name: 'pertuzumab' amount: 4.1 start_date: moment('Jun 16, 2013', 'MMM DD, YYYY').valueOf() duration: 30 } ] ] beforeEach -> # Fake the router service module. ng.module('qiprofile.subject') inject [ 'Subject', '$httpBackend', '$rootScope', '$timeout', (_Subject_, _$httpBackend_, _$rootScope_, _timeout_) -> Subject = _Subject_ $httpBackend = _$httpBackend_ $rootScope = _$rootScope_ $timeout = _timeout_ # The mock subjects http call. url = encodeURI('/api/subject?where=' + '{"project":"QIN_Test","collection":"Breast","number":1}') $httpBackend.whenGET(url) .respond(JSON.stringify(_items: [mock.subject])) # The mock subject http call. url = encodeURI('/api/subject/s1') $httpBackend.whenGET(url).respond(JSON.stringify(mock.subject)) ] # Fetch the subject. condition = id: mock.subject._id Subject.find(condition).then (fetched) -> subject = fetched $httpBackend.flush() afterEach -> # Note: Angular 1.2.5 and after issue a 'Digest in progress' message # unless the digest argment is set to false as shown below. $httpBackend.verifyNoOutstandingExpectation(false) $httpBackend.verifyNoOutstandingRequest() describe 'find', -> it 'should fetch the subject by id', -> expect(subject, "Subject not fetched").to.exist it 'should fetch the subject by _id', -> condition = _id: mock.subject._id subject = Subject.find(condition) expect(subject, "Subject not fetched").to.eventually.exist $httpBackend.flush() it 'should fetch the subject by secondary key', -> condition = project: mock.subject.project collection: mock.subject.collection number: mock.subject.number subject = Subject.find(condition) expect(subject, "Subject not fetched").to.eventually.exist $httpBackend.flush() describe 'Encounters', -> it 'should have subject encounters', -> expect(subject.encounters, "Subject is missing encounters") .to.exist expect(subject.encounters.length, "Subject encounters" + " length is incorrect") .to.equal(3) describe 'Demographics', -> # Validate the birth date. it 'should anonymize the subject birth date', -> expect(subject.birthDate, "Subject is missing a birth date") .to.exist expect(subject.birthDate.valueOf(), "Subject birth date is" + " incorrect") .to.equal(moment('Jul 7, 1986', 'MMM DD, YYYY').valueOf()) describe 'Clinical', -> # Validate the clinical encounters. it 'should set the clinical encounters', -> expect(subject.clinicalEncounters, "Subject is missing clinical encounters") .to.exist expect(subject.clinicalEncounters.length, "Subject clinical encounters length is incorrect") .to.equal(1) it 'should set the clinical encounter title', -> enc = subject.clinicalEncounters[0] expect(enc.title, "Encounter is missing a title").to.exist expect(enc.title, "Encounter title is incorrect") .to.equal('Surgery') # Validate the treatments. it 'should extend the subject treatments', -> expect(subject.treatments, "Subject is missing treatments") .to.exist expect(subject.treatments.length, "Subject encounters length" + " is incorrect").to.equal(1) trt = subject.treatments[0] mockTrt = mock.subject.treatments[0] expect(trt.treatmentType, "Treatment type is missing").to.exist expect(trt.treatmentType, "Treatment type is incorrect") .to.equal(mockTrt.treatment_type) expect(trt.start_date.valueOf(), "Treatment start date is incorrect") .to.equal(mockTrt.start_date) expect(trt.dosages, "Treatment dosages is missing") .to.exist.and.not.be.empty expect(trt.dosages.length, "Treatment dosages count is incorrect") .to.equal(2) dsg = trt.dosages[0] mockDsg = mockTrt.dosages[0] expect(dsg.agent, "Dosage agent is missing").to.exist expect(dsg.agent.name, "Dosage agent name is missing").to.exist expect(dsg.start_date.valueOf(), "Treatment dosage start date" + " is incorrect") .to.equal(mockDsg.start_date) expect(dsg.duration, "Treatment dosage duration is incorrect") .to.equal(mockDsg.duration) describe 'Session', -> # Validate the sessions (without detail). it 'should have a subject session', -> expect(subject.sessions, "Subject is missing sessions").to.exist expect(subject.sessions.length, "Subject session count is" + " incorrect") .to.equal(2) it 'should set the subject multiSession flag', -> expect(subject.isMultiSession(), "Subject multi-session flag" + " is incorrect") .to.be.true